The select publications below offer background and further insights regarding the value of speaking the same language in environmental health sciences research.

Adverse Outcome Pathways and Aggregate Exposure Pathways

• Hines DE, Edwards SW, Conolly RB, Jarabek AM. 2018. A Case Study Application of the Aggregate Exposure Pathway (AEP) and Adverse Outcome Pathway (AOP) Frameworks to Facilitate the Integration of Human Health and Ecological End Points for Cumulative Risk Assessment (CRA). Environ Sci Technol. doi: 10.1021/acs.est.7b04940. 52(2): 839-849. [Abstract Hines DE, Edwards SW, Conolly RB, Jarabek AM. 2018. A Case Study Application of the Aggregate Exposure Pathway (AEP) and Adverse Outcome Pathway (AOP) Frameworks to Facilitate the Integration of Human Health and Ecological End Points for Cumulative Risk Assessment (CRA). Environ Sci Technol. doi: 10.1021/acs.est.7b04940. 52(2): 839-849.]
• Villeneuve DL, Crump D, Garcia-Reyero N, Hecker M, Hutchinson TH, LaLone CA, Landesmann B, Lettieri T, Munn S, Nepelska M, Ottinger MA, Vergauwen L, Whelan M. 2014. Adverse outcome pathway (AOP) development I: strategies and principles. Toxicol Sci. 142(2): 312-320. [Abstract Villeneuve DL, Crump D, Garcia-Reyero N, Hecker M, Hutchinson TH, LaLone CA, Landesmann B, Lettieri T, Munn S, Nepelska M, Ottinger MA, Vergauwen L, Whelan M. 2014. Adverse outcome pathway (AOP) development I: strategies and principles. Toxicol Sci. 142(2): 312-320.]
• Villeneuve DL, Crump D, Garcia-Reyero N, Hecker M, Hutchinson TH, LaLone CA, Landesmann B, Lettieri T, Munn S, Nepelska M, Ottinger MA, Vergauwen L, Whelan M. 2014. Adverse outcome pathway development II: best practices. Toxicol Sci. 142(2): 321-330. [Abstract Villeneuve DL, Crump D, Garcia-Reyero N, Hecker M, Hutchinson TH, LaLone CA, Landesmann B, Lettieri T, Munn S, Nepelska M, Ottinger MA, Vergauwen L, Whelan M. 2014. Adverse outcome pathway development II: best practices. Toxicol Sci. 142(2): 321-330.]

Environmental Epidemiology

• Brook JR, Doiron D, Setton E, Lakerveld J. 2021. Centralizing environmental datasets to support (inter)national chronic disease research: Values, challenges, and recommendations. Environ Epidemiol. 5(1):e129. [Abstract Brook JR, Doiron D, Setton E, Lakerveld J. 2021. Centralizing environmental datasets to support (inter)national chronic disease research: Values, challenges, and recommendations. Environ Epidemiol. 5(1):e129.]
• Burns CJ, Lakind JS, Mattison DR, Alcala CS, Branch F, Castillo J, Clark A, Clougherty JE, Darney SP, Erickson H, Goodman M, Greiner M, Jurek AM, Miller A, Rooney AA, Zidek A. 2019. A matrix for bridging the epidemiology and risk assessment gap. Global Epidemiology. 1: 100005 [Abstract Burns CJ, Lakind JS, Mattison DR, Alcala CS, Branch F, Castillo J, Clark A, Clougherty JE, Darney SP, Erickson H, Goodman M, Greiner M, Jurek AM, Miller A, Rooney AA, Zidek A. 2019. A matrix for bridging the epidemiology and risk assessment gap. Global Epidemiology. 1: 100005]

Exposome

• Escher BI, Hackermüller J, Polte T, Scholz S, Aigner A, Altenburger R, Böhme A, Bopp SK, Brack W, Busch W, Chadeau-Hyam M, Covaci A, Eisenträger A, Galligan JJ, Garcia-Reyero N, Hartung T, Hein M, Herberth G, Jahnke A, Kleinjans J, Klüver N, Krauss M, Lamoree M, Lehmann I, Luckenbach T, Miller GW, Müller A, Phillips DH, Reemtsma T, Rolle-Kampczyk U, Schüürmann G, Schwikowski B, Tan YM, Trump S, Walter-Rohde S, Wambaugh JF. 2017. From the exposome to mechanistic understanding of chemical-induced adverse effects. Environ Int. 99:97-106. [Abstract Escher BI, Hackermüller J, Polte T, Scholz S, Aigner A, Altenburger R, Böhme A, Bopp SK, Brack W, Busch W, Chadeau-Hyam M, Covaci A, Eisenträger A, Galligan JJ, Garcia-Reyero N, Hartung T, Hein M, Herberth G, Jahnke A, Kleinjans J, Klüver N, Krauss M, Lamoree M, Lehmann I, Luckenbach T, Miller GW, Müller A, Phillips DH, Reemtsma T, Rolle-Kampczyk U, Schüürmann G, Schwikowski B, Tan YM, Trump S, Walter-Rohde S, Wambaugh JF. 2017. From the exposome to mechanistic understanding of chemical-induced adverse effects. Environ Int. 99:97-106.]
• Manrai AK, Cui Y, Bushel PR, et al. 2017. Informatics and data analytics to support exposome-based discovery for public health. Annual Review of Public Health. 20(38): 279-294. [Abstract Manrai AK, Cui Y, Bushel PR, et al. 2017. Informatics and data analytics to support exposome-based discovery for public health. Annual Review of Public Health. 20(38): 279-294.]

Integrative Platforms

• Davis AP, Grondin CJ, Johnson RJ, et al. 2021. Comparative Toxicogenomics Database (CTD): Update 2021. Nucleic Acids Research. 49(D1): D1138-D1143. [Abstract Davis AP, Grondin CJ, Johnson RJ, et al. 2021. Comparative Toxicogenomics Database (CTD): Update 2021. Nucleic Acids Research. 49(D1): D1138-D1143.]
• Mungall CJ, McMurry JA, Köhler S, et al. 2017. The Monarch Initiative: An integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. 45(D1): D712-D722. [Abstract Mungall CJ, McMurry JA, Köhler S, et al. 2017. The Monarch Initiative: An integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. 45(D1): D712-D722.]

Ontologies

• Whaley P, Edwards SW, Kraft A, et al. 2020. Knowledge organization systems for systematic chemical assessments. Environmental Health Perspectives. 128(12): 125001. [Abstract Whaley P, Edwards SW, Kraft A, et al. 2020. Knowledge organization systems for systematic chemical assessments. Environmental Health Perspectives. 128(12): 125001.]
• Boyles RR, Thessen AE, and Haendel MA. 2019. Ontology-based data integration for advancing toxicological knowledge. Current Opinion in Toxicology. 16: 67-74. [Abstract Boyles RR, Thessen AE, and Haendel MA. 2019. Ontology-based data integration for advancing toxicological knowledge. Current Opinion in Toxicology. 16: 67-74.]
• Price P and Leonard J. 2019. A proposal for creating a taxonomy of chemical interactions using concepts from the aggregate exposure and adverse outcome pathways. Current Opinion in Toxicology. 16 (Aug): 58-66. [Abstract Price P and Leonard J. 2019. A proposal for creating a taxonomy of chemical interactions using concepts from the aggregate exposure and adverse outcome pathways. Current Opinion in Toxicology. 16 (Aug): 58-66.]
• Köhler S, Doelken SC, Mungall CJ, et al. 2014. The Human Phenotype Ontology project: Linking molecular biology and disease through phenotype data. Nucleic Acids Research. 42(D1): D966-D974. [Abstract Köhler S, Doelken SC, Mungall CJ, et al. 2014. The Human Phenotype Ontology project: Linking molecular biology and disease through phenotype data. Nucleic Acids Research. 42(D1): D966-D974.]
• Hardy B, Apic G, Carthew P, et al. 2012. A toxicology ontology roadmap. ALTEX. 29(20): 129-37. [Abstract Hardy B, Apic G, Carthew P, et al. 2012. A toxicology ontology roadmap. ALTEX. 29(20): 129-37.]
• Mattingly CJ, McKone TE, Callahan MA, et al. 2012. Providing the missing link: The Exposure Science Ontology ExO. Environmental Science & Technology. 46(6): 3046-3053. [Abstract Mattingly CJ, McKone TE, Callahan MA, et al. 2012. Providing the missing link: The Exposure Science Ontology ExO. Environmental Science & Technology. 46(6): 3046-3053.]