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Chromatin & Gene Expression Group

  1. Hoffman JA, Trotter KW, Day CR, Ward JM, Inoue K, Rodriguez J, Archer TK. Multimodal regulatory elements within a hormone-specific super enhancer control a heterogeneous transcriptional response. Mol Cell. 2022 Feb 17;82(4):803-815.e5. [Abstract Hoffman JA, Trotter KW, Day CR, Ward JM, Inoue K, Rodriguez J, Archer TK. Multimodal regulatory elements within a hormone-specific super enhancer control a heterogeneous transcriptional response. Mol Cell. 2022 Feb 17;82(4):803-815.e5.]
  2. Bisogno LS, Yang J, Bennett BD, Ward JM, Mackey LC, Annab LA, Bushel PR, Singhal S, Schurman SH, Byun JS, Nápoles AM, Pérez-Stable EJ, Fargo DC, Gardner K, Archer TK. 2020. Ancestry-dependent gene expression correlates with reprogramming to pluripotency and multiple dynamic biological processes. Sci Adv; doi: 10.1126/sciadv.abc3851 [Online 20 November 2020]. [Abstract Bisogno LS, Yang J, Bennett BD, Ward JM, Mackey LC, Annab LA, Bushel PR, Singhal S, Schurman SH, Byun JS, Nápoles AM, Pérez-Stable EJ, Fargo DC, Gardner K, Archer TK. 2020. Ancestry-dependent gene expression correlates with reprogramming to pluripotency and multiple dynamic biological processes. Sci Adv; doi: 10.1126/sciadv.abc3851 [Online 20 November 2020].]
  3. Dietrich N, Trotter K, Ward JM, Archer TK. BRG1 HSA domain interactions with BCL7 proteins are critical for remodeling and gene expression. Life Sci Alliance. 2023;6(5):e202201770. Published 2023 Feb 17. [Abstract Dietrich N, Trotter K, Ward JM, Archer TK. BRG1 HSA domain interactions with BCL7 proteins are critical for remodeling and gene expression. Life Sci Alliance. 2023;6(5):e202201770. Published 2023 Feb 17.]
  4. Dietrich N, Hoffman JA, Archer TK. BAF Complexes and the Glucocorticoid Receptor in Breast Cancers. Curr Opin Endocr Metab Res. 2020;15:8-14. [Abstract Dietrich N, Hoffman JA, Archer TK. BAF Complexes and the Glucocorticoid Receptor in Breast Cancers. Curr Opin Endocr Metab Res. 2020;15:8-14.]
  5. Collins FS, Adams AB, Aklin C, Archer TK, Bernard MA, Boone E, Burklow J, Evans MK, Jackson S, Johnson AC, Lorsch J, Lowden MR, Nápoles AM, Ordóñez AE, Rivers R, Rucker V, Schwetz T, Segre JA, Tabak LA, Hooper MW, Wolinetz C; NIH UNITE. Affirming NIH's commitment to addressing structural racism in the biomedical research enterprise. Cell. 2021;184(12):3075-3079. [Abstract Collins FS, Adams AB, Aklin C, Archer TK, Bernard MA, Boone E, Burklow J, Evans MK, Jackson S, Johnson AC, Lorsch J, Lowden MR, Nápoles AM, Ordóñez AE, Rivers R, Rucker V, Schwetz T, Segre JA, Tabak LA, Hooper MW, Wolinetz C; NIH UNITE. Affirming NIH's commitment to addressing structural racism in the biomedical research enterprise. Cell. 2021;184(12):3075-3079.]
  6. Hoffman JA, Papas BN, Trotter KW, Archer TK. 2020. Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells. Commun Biol 3(1):126. [Abstract Hoffman JA, Papas BN, Trotter KW, Archer TK. 2020. Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells. Commun Biol 3(1):126.]
  7. Kinyamu HK, Bennett BD, Bushel PR, Archer TK. 2020. Proteasome inhibition creates a chromatin landscape favorable to RNA Pol II processivity. J Biol Chem 295(5):1271-1287. [Abstract Kinyamu HK, Bennett BD, Bushel PR, Archer TK. 2020. Proteasome inhibition creates a chromatin landscape favorable to RNA Pol II processivity. J Biol Chem 295(5):1271-1287.]
  8. Langer, LF, Ward, JM, Archer, TK. Tumor suppressor SMARCB1 suppresses super-enhancers to govern hESC lineage determination. eLife 2019. [Abstract Langer, LF, Ward, JM, Archer, TK. Tumor suppressor SMARCB1 suppresses super-enhancers to govern hESC lineage determination. eLife 2019.]
  9. Mackey LC, Annab LA , Yang J , Rao B1, Kissling GE, Schurman SH, Dixon D, Archer TK. Epigenetic Enzymes, Age, and Ancestry Regulate the Efficiency of Human iPSC Reprogramming. Stem Cells 2018 36(11):1697-1708. [Abstract Mackey LC, Annab LA , Yang J , Rao B1, Kissling GE, Schurman SH, Dixon D, Archer TK. Epigenetic Enzymes, Age, and Ancestry Regulate the Efficiency of Human iPSC Reprogramming. Stem Cells 2018 36(11):1697-1708.]
  10. Hoffman JA, Trotter KW, Ward JM, Archer TK. BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome. eLife 2018. [Abstract Hoffman JA, Trotter KW, Ward JM, Archer TK. BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome. eLife 2018.]
  11. Lavender CA, Cannady KR, Hoffman JA, Trotter KW, Gilchrist DA, Bennett BD, Burkholder AB, Burd CJ, Fargo DC, Archer TK. Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters. PLoS genetics 2016 12(8):-. [Abstract Lavender CA, Cannady KR, Hoffman JA, Trotter KW, Gilchrist DA, Bennett BD, Burkholder AB, Burd CJ, Fargo DC, Archer TK. Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters. PLoS genetics 2016 12(8):-.]
  12. Wade SL, Langer LF, Ward JM, Archer TK. MiRNA-Mediated Regulation of the SWI/SNF Chromatin Remodeling Complex Controls Pluripotency and Endodermal Differentiation in Human ESCs. Stem Cells. 2015;33(10):2925-2935. [Abstract Wade SL, Langer LF, Ward JM, Archer TK. MiRNA-Mediated Regulation of the SWI/SNF Chromatin Remodeling Complex Controls Pluripotency and Endodermal Differentiation in Human ESCs. Stem Cells. 2015;33(10):2925-2935.]
  13. Yang J, Bennett BD, Luo S, Inoue K, Grimm SA, Schroth GP, Bushel PR, Kinyamu HK, Archer TK. LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells. Molecular and cellular biology 2015 35(18):3225-3243. [Abstract Yang J, Bennett BD, Luo S, Inoue K, Grimm SA, Schroth GP, Bushel PR, Kinyamu HK, Archer TK. LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells. Molecular and cellular biology 2015 35(18):3225-3243.]
  14. Trotter KW, King HA, Archer TK. Glucocorticoid receptor transcriptional activation via the BRG1 dependent recruitment of TOP2β and Ku70/86. Molecular and cellular biology 2015 35(16):2799-2817. [Abstract Trotter KW, King HA, Archer TK. Glucocorticoid receptor transcriptional activation via the BRG1 dependent recruitment of TOP2β and Ku70/86. Molecular and cellular biology 2015 35(16):2799-2817.]
  15. Singh AP, Archer TK. Analysis of the SWI/SNF chromatin-remodeling complex during early heart development and BAF250a repression cardiac gene transcription during P19 cell differentiation. Nucleic Acids Res. 2014;42(5):2958-2975. [Abstract Singh AP, Archer TK. Analysis of the SWI/SNF chromatin-remodeling complex during early heart development and BAF250a repression cardiac gene transcription during P19 cell differentiation. Nucleic Acids Res. 2014;42(5):2958-2975.]
  16. Fryer CJ, Archer TK. Chromatin remodelling of the glucocorticoid receptor requires the BRG1 complex. Nature 393:81-91, 1998. [Abstract Fryer CJ, Archer TK. Chromatin remodelling of the glucocorticoid receptor requires the BRG1 complex. Nature 393:81-91, 1998.]