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About ORIO

ORIO (Online Resource for Integrative Omics) is an analysis platform for data from next generation sequencing (NGS). ORIO enables rapid analysis and integration of NGS data sets. ORIO was designed based on three central observations:

  1. Diverse biological phenomena may be represented by discrete positions in genomic space. Think protein binding sites for transcription factor regulation or transcription start sites for transcription initiation.
  2. Despite a wide diversity of NGS experiment and data types, analysis of NGS data often involves consideration and manipulation of genomic read coverage.
  3. Visual inspection remains a critical component of analysis.

The bulk of analysis is performed using the ORIO analysis package. An ORIO analysis run consists of two steps. First, the intersections between a feature list of genomic coordinates and a number of NGS data sets are found. Second, the NGS data sets are correlated based on these intersection values. The output of these steps may be dynamically visualized using ORIO-web.

orio data sets and intersections

ORIO has been published in Lavender et al. 2017. To cite in your publications:

Lavender CA, Shapiro AJ, Burkholder AB, Bennett BD, Adelman K, Fargo DC. ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data. Nucleic Acids Res. 2017 Jun 2; 45 (10): 5678-5690. doi: 10.1093/nar/gkx270.