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Selected Publications

Single Cell Dynamics Group

    1. Rodriguez J, Ren G, Day CR, Zhao K, Chow CC, Larson DR. 2018. Intrinsic dynamics of a human gene reveal the basis of expression heterogeneity. Cell; doi:10.1016/j.cell.2018.11.026 [Online 10 December 2018]. [Abstract Rodriguez J, Ren G, Day CR, Zhao K, Chow CC, Larson DR. 2018. Intrinsic dynamics of a human gene reveal the basis of expression heterogeneity. Cell; doi:10.1016/j.cell.2018.11.026 [Online 10 December 2018].]
    2. Tsai PF, Dell’Orso S, Rodriguez J, Vivanco KO, Ko KD, Jiang K, Juan AH, Sarshad AA, Vian L, Tran M, Wangsa D, Wang AH, Perovanovic J, Anastasakis D, Ralston E, Ried T, Sun HW, Hafner M, Larson DR, Sartorelli V. 2018. A muscle-specific enhancer RNA mediates cohesion recruitment and regulates transcription in trans. Mol Cell 71(1):129-141.e8. [Abstract Tsai PF, Dell’Orso S, Rodriguez J, Vivanco KO, Ko KD, Jiang K, Juan AH, Sarshad AA, Vian L, Tran M, Wangsa D, Wang AH, Perovanovic J, Anastasakis D, Ralston E, Ried T, Sun HW, Hafner M, Larson DR, Sartorelli V. 2018. A muscle-specific enhancer RNA mediates cohesion recruitment and regulates transcription in trans. Mol Cell 71(1):129-141.e8.]
    3. Ren G, Jin W, Cui K, Rodriguez J, Hu G, Zhang Z, Larson DR, Zhao K. 2017. CTCF-mediated enhancer-promoter interaction is a critical regulator of cell-to-cell variation of gene expression. Mol Cell 67(6):1049-1058.e6. [Abstract Ren G, Jin W, Cui K, Rodriguez J, Hu G, Zhang Z, Larson DR, Zhao K. 2017. CTCF-mediated enhancer-promoter interaction is a critical regulator of cell-to-cell variation of gene expression. Mol Cell 67(6):1049-1058.e6.]
    4. Lenstra TL, Rodriguez J, Chen H, Larson DR. 2016. Transcription dynamics in living cells. Annu Rev Biophys 45:25-47. [Abstract Lenstra TL, Rodriguez J, Chen H, Larson DR. 2016. Transcription dynamics in living cells. Annu Rev Biophys 45:25-47.]
    5. Rodriguez J, Tang CH, Khodor YL, Vodala S, Menet JS, Rosbash M. 2013. Nascent-Seq analysis of Drosophila cycling gene expression. Proc Natl Acad Sci U S A 110(4):E275-284. [Abstract Rodriguez J, Tang CH, Khodor YL, Vodala S, Menet JS, Rosbash M. 2013. Nascent-Seq analysis of Drosophila cycling gene expression. Proc Natl Acad Sci U S A 110(4):E275-284.]
    6. Menet JS, Rodriguez J, Abruzzi KC, Rosbash M. 2012. Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. Elife 1:e00011. [Abstract Menet JS, Rodriguez J, Abruzzi KC, Rosbash M. 2012. Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. Elife 1:e00011.]
    7. Rodriguez J, Menet JS, Rosbash M. 2012. Nascent-Seq indicates widespread cotranscriptional RNA editing in Drosophila. Moll Cell 47(1):27-37. [Abstract Rodriguez J, Menet JS, Rosbash M. 2012. Nascent-Seq indicates widespread cotranscriptional RNA editing in Drosophila. Moll Cell 47(1):27-37.]
    8. International Human Genome Sequencing Consortium. 2004. Finishing the euchromatic sequence of the human genome. Nature 431(7011):931-945. [Abstract International Human Genome Sequencing Consortium. 2004. Finishing the euchromatic sequence of the human genome. Nature 431(7011):931-945.]
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