ORIOGEN (O rder R estricted I nference for O rdered G ene E xpressioN )
and multidimensional pairwise comparisons

 

ORIOGEN Main Screen

The ORIOGEN Main Screen is used to select profiles and to run the analysis. The window is divided into 4 panels as follows:

In addition to the above, the following menu items are available:

ORIOGEN Typical Session

A typical session would consist of the following steps:

  1. Select one or more profiles by entering the appropriate information in the Profile Selection Panel. Note the Graph panel updates on the fly as profile options are selected.
  2. Click the "Add Selected Profile(s)" button as each profile selection is made.
  3. Review your selections in the Text Panel at the top right of the screen.
  4. Click the "Start Processing" button to start running the gene selection algorithm.
  5. While the gene selection processing is going on, you can click the "Stop Processing" button to pause or stop the process. If you wish to view the results so far and then continue processing, you can click the Stop button, view the results, and then click on the Continue Processing option in the Continue menu.
  6. When the processing is complete, click "Yes" to view the results in graphical form. You can also click on the "Modify Initial Inputs" button, select a new input and output file name, and run another analysis.