Amelie Baud, European Bioinformatics Institute- Cambridge
- Baud A, Guryev V, Hummel O, Johannesson M; Rat Genome Sequencing and Mapping Consortium, Flint J. Genomes and Phenomes of a Population of Outbred Rats and Its Progenitors. Scientific Data. 2014 June. doi: 10.1038/sdata.2014.11. [Abstract Baud A, Guryev V, Hummel O, Johannesson M; Rat Genome Sequencing and Mapping Consortium, Flint J. Genomes and Phenomes of a Population of Outbred Rats and Its Progenitors. Scientific Data. 2014 June. doi: 10.1038/sdata.2014.11.]
- Rat Genome Sequencing and Mapping Consortium, Baud A, Hermsen R, Guryev V, Stridh P, Graham D, McBride MW, Foroud T, Calderari S, Diez M, Ockinger J, Beyeen AD, Gillett A, Abdelmagid N, Guerreiro-Cacais AO, Jagodic M, Tuncel J, Norin U, Beattie E, Huynh N, Miller WH, Koller DL, Alam I, Falak S, Osborne-Pellegrin M, Martinez-Membrives E, Canete T, Blazquez G, Vicens-Costa E, Mont-Cardona C, Diaz-Moran S, Tobena A, Hummel O, Zelenika D, Saar K, Patone G, Bauerfeind A, Bihoreau MT, Heinig M, Lee YA, Rintisch C, Schulz H, Wheeler DA, Worley KC, Muzny DM, Gibbs RA, Lathrop M, Lansu N, Toonen P, Ruzius FP, de Bruijn E, Hauser H, Adams DJ, Keane T, Atanur SS, Aitman TJ, Flicek P, Malinauskas T, Jones EY, Ekman D, Lopez-Aumatell R, Dominiczak AF, Johannesson M, Holmdahl R, Olsson T, Gauguier D, Hubner N, Fernandez-Teruel A, Cuppen E, Mott R, Flint J. Combined Sequence-based and Genetic Mapping Analysis of Complex Traits in Outbred Rats. Nat Genet. 2013 Jul; 45(7): 767-775. doi: 10.1038/ng.2644. [Abstract Rat Genome Sequencing and Mapping Consortium, Baud A, Hermsen R, Guryev V, Stridh P, Graham D, McBride MW, Foroud T, Calderari S, Diez M, Ockinger J, Beyeen AD, Gillett A, Abdelmagid N, Guerreiro-Cacais AO, Jagodic M, Tuncel J, Norin U, Beattie E, Huynh N, Miller WH, Koller DL, Alam I, Falak S, Osborne-Pellegrin M, Martinez-Membrives E, Canete T, Blazquez G, Vicens-Costa E, Mont-Cardona C, Diaz-Moran S, Tobena A, Hummel O, Zelenika D, Saar K, Patone G, Bauerfeind A, Bihoreau MT, Heinig M, Lee YA, Rintisch C, Schulz H, Wheeler DA, Worley KC, Muzny DM, Gibbs RA, Lathrop M, Lansu N, Toonen P, Ruzius FP, de Bruijn E, Hauser H, Adams DJ, Keane T, Atanur SS, Aitman TJ, Flicek P, Malinauskas T, Jones EY, Ekman D, Lopez-Aumatell R, Dominiczak AF, Johannesson M, Holmdahl R, Olsson T, Gauguier D, Hubner N, Fernandez-Teruel A, Cuppen E, Mott R, Flint J. Combined Sequence-based and Genetic Mapping Analysis of Complex Traits in Outbred Rats. Nat Genet. 2013 Jul; 45(7): 767-775. doi: 10.1038/ng.2644.] [Full Text Rat Genome Sequencing and Mapping Consortium, Baud A, Hermsen R, Guryev V, Stridh P, Graham D, McBride MW, Foroud T, Calderari S, Diez M, Ockinger J, Beyeen AD, Gillett A, Abdelmagid N, Guerreiro-Cacais AO, Jagodic M, Tuncel J, Norin U, Beattie E, Huynh N, Miller WH, Koller DL, Alam I, Falak S, Osborne-Pellegrin M, Martinez-Membrives E, Canete T, Blazquez G, Vicens-Costa E, Mont-Cardona C, Diaz-Moran S, Tobena A, Hummel O, Zelenika D, Saar K, Patone G, Bauerfeind A, Bihoreau MT, Heinig M, Lee YA, Rintisch C, Schulz H, Wheeler DA, Worley KC, Muzny DM, Gibbs RA, Lathrop M, Lansu N, Toonen P, Ruzius FP, de Bruijn E, Hauser H, Adams DJ, Keane T, Atanur SS, Aitman TJ, Flicek P, Malinauskas T, Jones EY, Ekman D, Lopez-Aumatell R, Dominiczak AF, Johannesson M, Holmdahl R, Olsson T, Gauguier D, Hubner N, Fernandez-Teruel A, Cuppen E, Mott R, Flint J. Combined Sequence-based and Genetic Mapping Analysis of Complex Traits in Outbred Rats. Nat Genet. 2013 Jul; 45(7): 767-775. doi: 10.1038/ng.2644.]
Elissa Chesler, The Jackson Laboratory
- Dickson PE, Ndukum J, Wilcox T, Clark J, Roy B, Zhang L, Li Y, Lin DT, Chesler EJ. Association of Novelty-related Behaviors and Intravenous Cocaine Self-administration in Diversity Outbred Mice. Psychopharmacology (Berl). 2014 Sep 20. [Epub ahead of print] [Abstract Dickson PE, Ndukum J, Wilcox T, Clark J, Roy B, Zhang L, Li Y, Lin DT, Chesler EJ. Association of Novelty-related Behaviors and Intravenous Cocaine Self-administration in Diversity Outbred Mice. Psychopharmacology (Berl). 2014 Sep 20. [Epub ahead of print]]
- Recla JM, Robledo RF, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. Precise Genetic Mapping and Integrative Bioinformatics in Diversity Outbred Mice Reveals Hydin as a Novel Pain Gene. Mamm Genome. 2014 Jun;25(5-6):211-22. doi: 10.1007/s00335-014-9508-0. Epub 2014 Apr 5. [Abstract Recla JM, Robledo RF, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. Precise Genetic Mapping and Integrative Bioinformatics in Diversity Outbred Mice Reveals Hydin as a Novel Pain Gene. Mamm Genome. 2014 Jun;25(5-6):211-22. doi: 10.1007/s00335-014-9508-0. Epub 2014 Apr 5.] [Full Text Recla JM, Robledo RF, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. Precise Genetic Mapping and Integrative Bioinformatics in Diversity Outbred Mice Reveals Hydin as a Novel Pain Gene. Mamm Genome. 2014 Jun;25(5-6):211-22. doi: 10.1007/s00335-014-9508-0. Epub 2014 Apr 5.]
- Chesler EJ. Out of the Bottleneck: The Diversity Outcross and Collaborative Cross Mouse Populations in Behavioral Genetics Research. Mamm Genome. 2014 Feb;25(1-2):3-11. doi: 10.1007/s00335-013-9492-9. Epub 2013 Nov 23. Review. [Abstract Chesler EJ. Out of the Bottleneck: The Diversity Outcross and Collaborative Cross Mouse Populations in Behavioral Genetics Research. Mamm Genome. 2014 Feb;25(1-2):3-11. doi: 10.1007/s00335-013-9492-9. Epub 2013 Nov 23. Review.] [Full Text Chesler EJ. Out of the Bottleneck: The Diversity Outcross and Collaborative Cross Mouse Populations in Behavioral Genetics Research. Mamm Genome. 2014 Feb;25(1-2):3-11. doi: 10.1007/s00335-013-9492-9. Epub 2013 Nov 23. Review.]
- Logan RW, Robledo RF, Recla JM, Philip VM, Bubier JA, Jay JJ, Harwood C, Wilcox T, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. High-precision Genetic Mapping of Behavioral Traits in the Diversity Outbred Mouse Population. Genes Brain Behav. 2013 Jun;12(4):424-37. doi: 10.1111/gbb.12029. Epub 2013 Mar 20. [Abstract Logan RW, Robledo RF, Recla JM, Philip VM, Bubier JA, Jay JJ, Harwood C, Wilcox T, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. High-precision Genetic Mapping of Behavioral Traits in the Diversity Outbred Mouse Population. Genes Brain Behav. 2013 Jun;12(4):424-37. doi: 10.1111/gbb.12029. Epub 2013 Mar 20.] [Full Text Logan RW, Robledo RF, Recla JM, Philip VM, Bubier JA, Jay JJ, Harwood C, Wilcox T, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. High-precision Genetic Mapping of Behavioral Traits in the Diversity Outbred Mouse Population. Genes Brain Behav. 2013 Jun;12(4):424-37. doi: 10.1111/gbb.12029. Epub 2013 Mar 20.]
- Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV, Chesler EJ, Podar M. Host Genetic and Environmental Effects on Mouse Intestinal Microbiota. ISME J. 2012 Nov;6(11):2033-44. doi: 10.1038/ismej.2012.54. Epub 2012 Jun 14. [Abstract Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV, Chesler EJ, Podar M. Host Genetic and Environmental Effects on Mouse Intestinal Microbiota. ISME J. 2012 Nov;6(11):2033-44. doi: 10.1038/ismej.2012.54. Epub 2012 Jun 14.] [Full Text Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV, Chesler EJ, Podar M. Host Genetic and Environmental Effects on Mouse Intestinal Microbiota. ISME J. 2012 Nov;6(11):2033-44. doi: 10.1038/ismej.2012.54. Epub 2012 Jun 14.]
- Bubier JA, Chesler EJ. Accelerating Discovery for Complex Neurological and Behavioral Disorders Through Systems Genetics and Integrative Genomics in the Laboratory Mouse. Neurotherapeutics. 2012 Apr;9(2):338-48. doi:10.1007/s13311-012-0111-3. Review. [Abstract Bubier JA, Chesler EJ. Accelerating Discovery for Complex Neurological and Behavioral Disorders Through Systems Genetics and Integrative Genomics in the Laboratory Mouse. Neurotherapeutics. 2012 Apr;9(2):338-48. doi:10.1007/s13311-012-0111-3. Review.] [Full Text Bubier JA, Chesler EJ. Accelerating Discovery for Complex Neurological and Behavioral Disorders Through Systems Genetics and Integrative Genomics in the Laboratory Mouse. Neurotherapeutics. 2012 Apr;9(2):338-48. doi:10.1007/s13311-012-0111-3. Review.]
- Philip VM, Sokoloff G, Ackert-Bicknell CL, Striz M, Branstetter L, Beckmann MA, Spence JS, Jackson BL, Galloway LD, Barker P, Wymore AM, Hunsicker PR, Durtschi DC, Shaw GS, Shinpock S, Manly KF, Miller DR, Donohue KD, Culiat CT, Churchill GA, Lariviere WR, Palmer AA, O'Hara BF, Voy BH, Chesler EJ. Genetic Analysis in the Collaborative Cross Breeding Population. Genome Res. 2011 Aug;21(8):1223-38. doi: 10.1101/gr.113886.110. Epub 2011 Jul 6. [Abstract Philip VM, Sokoloff G, Ackert-Bicknell CL, Striz M, Branstetter L, Beckmann MA, Spence JS, Jackson BL, Galloway LD, Barker P, Wymore AM, Hunsicker PR, Durtschi DC, Shaw GS, Shinpock S, Manly KF, Miller DR, Donohue KD, Culiat CT, Churchill GA, Lariviere WR, Palmer AA, O'Hara BF, Voy BH, Chesler EJ. Genetic Analysis in the Collaborative Cross Breeding Population. Genome Res. 2011 Aug;21(8):1223-38. doi: 10.1101/gr.113886.110. Epub 2011 Jul 6.] [Full Text Philip VM, Sokoloff G, Ackert-Bicknell CL, Striz M, Branstetter L, Beckmann MA, Spence JS, Jackson BL, Galloway LD, Barker P, Wymore AM, Hunsicker PR, Durtschi DC, Shaw GS, Shinpock S, Manly KF, Miller DR, Donohue KD, Culiat CT, Churchill GA, Lariviere WR, Palmer AA, O'Hara BF, Voy BH, Chesler EJ. Genetic Analysis in the Collaborative Cross Breeding Population. Genome Res. 2011 Aug;21(8):1223-38. doi: 10.1101/gr.113886.110. Epub 2011 Jul 6.]
- Chesler EJ, Miller DR, Branstetter LR, Galloway LD, Jackson BL, Philip VM, Voy BH, Culiat CT, Threadgill DW, Williams RW, Churchill GA, Johnson DK, Manly KF. The Collaborative Cross at Oak Ridge National Laboratory: Developing a Powerful Resource for Systems Genetics. Mamm Genome. 2008 Jun;19(6):382-9. doi: 10.1007/s00335-008-9135-8. Epub 2008 Aug 21. [Abstract Chesler EJ, Miller DR, Branstetter LR, Galloway LD, Jackson BL, Philip VM, Voy BH, Culiat CT, Threadgill DW, Williams RW, Churchill GA, Johnson DK, Manly KF. The Collaborative Cross at Oak Ridge National Laboratory: Developing a Powerful Resource for Systems Genetics. Mamm Genome. 2008 Jun;19(6):382-9. doi: 10.1007/s00335-008-9135-8. Epub 2008 Aug 21.] [Full Text Chesler EJ, Miller DR, Branstetter LR, Galloway LD, Jackson BL, Philip VM, Voy BH, Culiat CT, Threadgill DW, Williams RW, Churchill GA, Johnson DK, Manly KF. The Collaborative Cross at Oak Ridge National Laboratory: Developing a Powerful Resource for Systems Genetics. Mamm Genome. 2008 Jun;19(6):382-9. doi: 10.1007/s00335-008-9135-8. Epub 2008 Aug 21.]
Weihsueh Chiu, Texas A&M University
- Zeise L, Bois FY, Chiu WA, Hattis D, Rusyn I, Guyton KZ. Addressing Human Variability in Next-generation Human Health Risk Assessments of Environmental Chemicals. Environ Health Perspect. 2013 Jan; 121(1):23-31. doi: 10.1289/ehp.1205687. Epub 2012 Oct 19. [Abstract Zeise L, Bois FY, Chiu WA, Hattis D, Rusyn I, Guyton KZ. Addressing Human Variability in Next-generation Human Health Risk Assessments of Environmental Chemicals. Environ Health Perspect. 2013 Jan; 121(1):23-31. doi: 10.1289/ehp.1205687. Epub 2012 Oct 19.]
- Krewski D, Westphal M, Andersen ME, Paoli GM, Chiu WA, Al-Zoughool M, Croteau MC, Burgoon LD, Cote I. A Framework for the next Generation of Risk Science. Environ Health Perspect. 2014 Aug;122(8):796-805. doi: 10.1289/ehp.1307260. Epub 2014 Apr 9. [Abstract Krewski D, Westphal M, Andersen ME, Paoli GM, Chiu WA, Al-Zoughool M, Croteau MC, Burgoon LD, Cote I. A Framework for the next Generation of Risk Science. Environ Health Perspect. 2014 Aug;122(8):796-805. doi: 10.1289/ehp.1307260. Epub 2014 Apr 9.]
- WHO/IPCS. 2014. Guidance Document on Evaluating and Expressing Uncertainty in Hazard Characterization. World Health Organization, Geneva, IPCS Harmonization Project Document No. 11.
Martin Ferris, University of North Carolina– Chapel Hill
- Rasmussen AL, Okumura A, Ferris MT, Green R, Feldmann F, Kelly SM, Scott DP, Safronetz D, Haddock E, LaCasse R, Thomas MJ, Sova P, Carter VS, Weiss JM, Miller DR, Shaw GD, Korth MJ, Heise MT, Baric RS, de Villena FP, Feldmann H, Katze MG. Host Genetic Diversity Enables Ebola Hemorrhagic Fever Pathogenesis and Resistance. Science. 2014 Nov 21;346(6212):987-91. doi: 10.1126/science.1259595. Epub 2014 Oct 30. [Abstract Rasmussen AL, Okumura A, Ferris MT, Green R, Feldmann F, Kelly SM, Scott DP, Safronetz D, Haddock E, LaCasse R, Thomas MJ, Sova P, Carter VS, Weiss JM, Miller DR, Shaw GD, Korth MJ, Heise MT, Baric RS, de Villena FP, Feldmann H, Katze MG. Host Genetic Diversity Enables Ebola Hemorrhagic Fever Pathogenesis and Resistance. Science. 2014 Nov 21;346(6212):987-91. doi: 10.1126/science.1259595. Epub 2014 Oct 30.]
Samir Kelada, University of North Carolina– Chapel Hill
- Kelada SN, Aylor DL, Peck BC, Ryan JF, Tavarez U, Buus RJ, Miller DR, Chesler EJ, Threadgill DW, Churchill GA, Pardo-Manuel de Villena F, Collins FS. Genetic Analysis of Hematological Parameters in Incipient Lines of the Collaborative Cross. G3: Genes|Genomes|Genetics ;2012, 2(2):157-165. [Abstract Kelada SN, Aylor DL, Peck BC, Ryan JF, Tavarez U, Buus RJ, Miller DR, Chesler EJ, Threadgill DW, Churchill GA, Pardo-Manuel de Villena F, Collins FS. Genetic Analysis of Hematological Parameters in Incipient Lines of the Collaborative Cross. G3: Genes|Genomes|Genetics ;2012, 2(2):157-165.]
- Kelada SN, Carpenter DE, Aylor DL, Chines P, Rutledge H, Chesler EJ, Churchill GA, Pardo-Manuel de Villena F, Schwartz DA, Collins FS. Integrative Genetic Analysis of Allergic Inflammation in the Murine Lung. American Journal of Respiratory Cell and Molecular Biology 2014, 51(3):436-445. [Abstract Kelada SN, Carpenter DE, Aylor DL, Chines P, Rutledge H, Chesler EJ, Churchill GA, Pardo-Manuel de Villena F, Schwartz DA, Collins FS. Integrative Genetic Analysis of Allergic Inflammation in the Murine Lung. American Journal of Respiratory Cell and Molecular Biology 2014, 51(3):436-445.]
- Rutledge H, Aylor DL, Carpenter DE, Peck BC, Chines P, Ostrowski LE, Chesler EJ, Churchill GA, de Villena FP, Kelada SN. Genetic Regulation of Zfp30, CXCL1, and Neutrophilic Inflammation in Murine Lung. Genetics 2014, 198(2):735-745. [Abstract Rutledge H, Aylor DL, Carpenter DE, Peck BC, Chines P, Ostrowski LE, Chesler EJ, Churchill GA, de Villena FP, Kelada SN. Genetic Regulation of Zfp30, CXCL1, and Neutrophilic Inflammation in Murine Lung. Genetics 2014, 198(2):735-745.]
Brian Parks, University of California, Los Angeles
- Parks BW, Sallam T, Mehrabian M, Psychogios N, Hui ST, Norheim F, Castellani LW, Rau CD, Pan C, Phun J, Zhou Z, Yang WP, Neuhaus I, Gargalovic PS, Kirchgessner TG, Graham M, Lee R, Tontonoz P, Gerszten RE, Hevener AL, Lusis AJ. Genetic Architecture of Insulin Resistance in the Mouse. Cell Metabolism. 2015 Feb; 21: 1-13. doi: 10.1016/j.cmet.2015.01.002. [Abstract Parks BW, Sallam T, Mehrabian M, Psychogios N, Hui ST, Norheim F, Castellani LW, Rau CD, Pan C, Phun J, Zhou Z, Yang WP, Neuhaus I, Gargalovic PS, Kirchgessner TG, Graham M, Lee R, Tontonoz P, Gerszten RE, Hevener AL, Lusis AJ. Genetic Architecture of Insulin Resistance in the Mouse. Cell Metabolism. 2015 Feb; 21: 1-13. doi: 10.1016/j.cmet.2015.01.002.]
- Orozco LD, Bennett BJ, Farber CR, Ghazalpour A, Pan C, Che N, Wen P, Qi HX, Mutukulu A, Siemers N, Neuhaus I, Yordanova R, Gargalovic P, Pellegrini M, Kirchgessner T, Lusis AJ. Unraveling Inflammatory Responses Using Systems Genetics and Gene-environment Interactions in Macrophages. Cell. 2012 Oct; 151: 658-670. Doi: 10.1016/j.cell.2012.08.043. [Abstract Orozco LD, Bennett BJ, Farber CR, Ghazalpour A, Pan C, Che N, Wen P, Qi HX, Mutukulu A, Siemers N, Neuhaus I, Yordanova R, Gargalovic P, Pellegrini M, Kirchgessner T, Lusis AJ. Unraveling Inflammatory Responses Using Systems Genetics and Gene-environment Interactions in Macrophages. Cell. 2012 Oct; 151: 658-670. Doi: 10.1016/j.cell.2012.08.043.]
- Bennett BJ, Farber CR, Orozco L, Kang HM, Ghazalpour A, Siemers N, Neubauer M, Neuhaus I, Yordanova R, Guan B, Truong A, Yang WP, He A, Kayne P, Gargalovic P, Kirchgessner T, Pan C, Castellani LW, Kostem E, Furlotte N, Drake TA, Eskin E, Lusis AJ. A High-resolution Association Mapping Panel for the Dissection of Complex Traits in Mice. Genome Research. 2010; 20: 281-290. doi: 10.1101/gr.099234.109. [Abstract Bennett BJ, Farber CR, Orozco L, Kang HM, Ghazalpour A, Siemers N, Neubauer M, Neuhaus I, Yordanova R, Guan B, Truong A, Yang WP, He A, Kayne P, Gargalovic P, Kirchgessner T, Pan C, Castellani LW, Kostem E, Furlotte N, Drake TA, Eskin E, Lusis AJ. A High-resolution Association Mapping Panel for the Dissection of Complex Traits in Mice. Genome Research. 2010; 20: 281-290. doi: 10.1101/gr.099234.109.]
- Ghazalpour A, Bennett BJ, Shih D, Che N, Orozco L, Pan C, Hagopian R, He A, Kayne P, Yang WP, Kirchgessner T, Lusis AJ. Genetic regulation of mouse liver metabolite levels. Molecular Systems Biology. 2014; 10: 790. doi: 10.15252/msb.20135004. [Abstract Ghazalpour A, Bennett BJ, Shih D, Che N, Orozco L, Pan C, Hagopian R, He A, Kayne P, Yang WP, Kirchgessner T, Lusis AJ. Genetic regulation of mouse liver metabolite levels. Molecular Systems Biology. 2014; 10: 790. doi: 10.15252/msb.20135004.]
Richard Paules, National Institute of Environmental Health Sciences (NIEHS)
- Collins FS, Gray GM, Bucher JR. Toxicology. Transforming Environmental Health Protection. Science. 2008 Feb 15;319(5865):906-7. [Abstract Collins FS, Gray GM, Bucher JR. Toxicology. Transforming Environmental Health Protection. Science. 2008 Feb 15;319(5865):906-7.]
- Kavlock RJ, Austin CP, Tice RR. Toxicity Testing in the 21st Century: Implications for Human Health Risk Assessment. Risk Analysis 2009; 29(4):485-487 [Abstract Kavlock RJ, Austin CP, Tice RR. Toxicity Testing in the 21st Century: Implications for Human Health Risk Assessment. Risk Analysis 2009; 29(4):485-487]
- Toxicity Testing in the 21st Century: A Vision and a Strategy. NAS Report. 2007 [Pdf Toxicity Testing in the 21st Century: A Vision and a Strategy. NAS Report. 2007]
- Abdo N, Xia M, Brown CC, Kosyk O, Huang R, Sakamuru S, Zhou YH, Jack JR, Gallins P, Xia K, Li Y, Chiu WA, Motsinger-Reif AA, Austin CP, Tice RR, Rusyn I, Wright FA. Population-Based in Vitro Hazard and Concentration-Response Assessment of Chemicals: The 1000 Genomes High-Throughput Screening Study. Environ Health Perspect. 2015 Jan 13 (Epub). [Abstract Abdo N, Xia M, Brown CC, Kosyk O, Huang R, Sakamuru S, Zhou YH, Jack JR, Gallins P, Xia K, Li Y, Chiu WA, Motsinger-Reif AA, Austin CP, Tice RR, Rusyn I, Wright FA. Population-Based in Vitro Hazard and Concentration-Response Assessment of Chemicals: The 1000 Genomes High-Throughput Screening Study. Environ Health Perspect. 2015 Jan 13 (Epub).]
- French JE, Gatti DM, Morgan DL, Kissling GE, Shockley KR, Knudsen GA, Shepard KG, Price HC, King D, Witt KL, Pedersen LC, Munger SC, Svenson KL, Churchill GA. Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environ Health Perspect. 2014 Nov 6. [Abstract French JE, Gatti DM, Morgan DL, Kissling GE, Shockley KR, Knudsen GA, Shepard KG, Price HC, King D, Witt KL, Pedersen LC, Munger SC, Svenson KL, Churchill GA. Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environ Health Perspect. 2014 Nov 6.]
Daniel Pomp, University of North Carolina– Chapel Hill
- Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, Powell CL, Steigerwalt J, Xie Y, Kelada SN, Collins FS, Yang IV, Schwartz DA, Branstetter LA, Chesler EJ, Miller DR, Spence J, Liu EY, McMillan L, Sarkar A, Wang J, Wang W, Zhang Q, Broman KW, Korstanje R, Durrant C, Mott R, Iraqi FA, Pomp D, Threadgill D, de Villena FP, Churchill GA. Genetic Analysis of Complex Traits in the Emerging Collaborative Cross. Genome Res. 2011 Aug; 21(8):1213-22. doi: 10.1101/gr.111310.110. [Abstract Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, Powell CL, Steigerwalt J, Xie Y, Kelada SN, Collins FS, Yang IV, Schwartz DA, Branstetter LA, Chesler EJ, Miller DR, Spence J, Liu EY, McMillan L, Sarkar A, Wang J, Wang W, Zhang Q, Broman KW, Korstanje R, Durrant C, Mott R, Iraqi FA, Pomp D, Threadgill D, de Villena FP, Churchill GA. Genetic Analysis of Complex Traits in the Emerging Collaborative Cross. Genome Res. 2011 Aug; 21(8):1213-22. doi: 10.1101/gr.111310.110.] [Full Text Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, Powell CL, Steigerwalt J, Xie Y, Kelada SN, Collins FS, Yang IV, Schwartz DA, Branstetter LA, Chesler EJ, Miller DR, Spence J, Liu EY, McMillan L, Sarkar A, Wang J, Wang W, Zhang Q, Broman KW, Korstanje R, Durrant C, Mott R, Iraqi FA, Pomp D, Threadgill D, de Villena FP, Churchill GA. Genetic Analysis of Complex Traits in the Emerging Collaborative Cross. Genome Res. 2011 Aug; 21(8):1213-22. doi: 10.1101/gr.111310.110.]
- Mathes WF, Aylor DL, Miller DR, Churchill GA, Chesler EJ, de Villena FP, Threadgill DW, Pomp D. Architecture of Energy Balance Traits in Emerging Lines of The Collaborative Cross. Am J Physiol Endocrinol Metab. 2011 Jun; 300(6):E1124-34. doi: 10.1152/ajpendo.00707.2010. [Abstract Mathes WF, Aylor DL, Miller DR, Churchill GA, Chesler EJ, de Villena FP, Threadgill DW, Pomp D. Architecture of Energy Balance Traits in Emerging Lines of The Collaborative Cross. Am J Physiol Endocrinol Metab. 2011 Jun; 300(6):E1124-34. doi: 10.1152/ajpendo.00707.2010.] [Full Text Mathes WF, Aylor DL, Miller DR, Churchill GA, Chesler EJ, de Villena FP, Threadgill DW, Pomp D. Architecture of Energy Balance Traits in Emerging Lines of The Collaborative Cross. Am J Physiol Endocrinol Metab. 2011 Jun; 300(6):E1124-34. doi: 10.1152/ajpendo.00707.2010.]
- Collaborative Cross Consortium. The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics. 2012 Feb; 190(2):389-401. doi: 10.1534/genetics.111.132639. [Abstract Collaborative Cross Consortium. The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics. 2012 Feb; 190(2):389-401. doi: 10.1534/genetics.111.132639.] [Full Text Collaborative Cross Consortium. The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics. 2012 Feb; 190(2):389-401. doi: 10.1534/genetics.111.132639.]
- Gatti DM, Svenson KL, Shabalin A, Wu LY, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman KW, Churchill GA. Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice. G3 (Bethesda). 2014 Sep 18; 4(9):1623-33. doi: 10.1534/g3.114.013748. [Abstract Gatti DM, Svenson KL, Shabalin A, Wu LY, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman KW, Churchill GA. Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice. G3 (Bethesda). 2014 Sep 18; 4(9):1623-33. doi: 10.1534/g3.114.013748.] [Full Text Gatti DM, Svenson KL, Shabalin A, Wu LY, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman KW, Churchill GA. Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice. G3 (Bethesda). 2014 Sep 18; 4(9):1623-33. doi: 10.1534/g3.114.013748.]
- Smallwood TL, Gatti DM, Quizon P, Weinstock GM, Jung KC, Zhao L, Hua K, Pomp D, Bennett BJ. High-resolution Genetic Mapping in the Diversity Outbred Mouse Population Identifies Apobec1 as a Candidate Gene for Atherosclerosis. G3 (Bethesda). 2014 Oct 23; 4(12):2353-63. doi: 10.1534/g3.114.014704. [Abstract Smallwood TL, Gatti DM, Quizon P, Weinstock GM, Jung KC, Zhao L, Hua K, Pomp D, Bennett BJ. High-resolution Genetic Mapping in the Diversity Outbred Mouse Population Identifies Apobec1 as a Candidate Gene for Atherosclerosis. G3 (Bethesda). 2014 Oct 23; 4(12):2353-63. doi: 10.1534/g3.114.014704.] [Full Text Smallwood TL, Gatti DM, Quizon P, Weinstock GM, Jung KC, Zhao L, Hua K, Pomp D, Bennett BJ. High-resolution Genetic Mapping in the Diversity Outbred Mouse Population Identifies Apobec1 as a Candidate Gene for Atherosclerosis. G3 (Bethesda). 2014 Oct 23; 4(12):2353-63. doi: 10.1534/g3.114.014704.]
Ivan Rusyn, Texas A&M University
- Abdo N, Xia M, Brown CC, Kosyk O, Huang R, Sakamuru S, Zhou YH, Jack JR, Gallins P, Xia K, Li Y, Chiu WA, Motsinger-Reif AA, Austin CP, Tice RR, Rusyn I, Wright FA. Population-Based in Vitro Hazard and Concentration-Response Assessment of Chemicals: The 1000 Genomes High-Throughput Screening Study. Environ Health Perspect. 2015 Jan 13 (Epub). [Abstract Abdo N, Xia M, Brown CC, Kosyk O, Huang R, Sakamuru S, Zhou YH, Jack JR, Gallins P, Xia K, Li Y, Chiu WA, Motsinger-Reif AA, Austin CP, Tice RR, Rusyn I, Wright FA. Population-Based in Vitro Hazard and Concentration-Response Assessment of Chemicals: The 1000 Genomes High-Throughput Screening Study. Environ Health Perspect. 2015 Jan 13 (Epub).]
- Yoo HS, Bradford BU, Kosyk O, Uehara T, Shymonyak S, Collins LB, Bodnar WM, Ball LM, Gold A, Rusyn I. Comparative Analysis of the Relationship Between Trichloroethylene Metabolism and Tissue-specific Toxicity among Inbred Mouse Strains: Kidney Effects. J Toxicol Environ Health A. 2015;78(1):32-49. doi: 10.1080/15287394.2015.958418. [Abstract Yoo HS, Bradford BU, Kosyk O, Uehara T, Shymonyak S, Collins LB, Bodnar WM, Ball LM, Gold A, Rusyn I. Comparative Analysis of the Relationship Between Trichloroethylene Metabolism and Tissue-specific Toxicity among Inbred Mouse Strains: Kidney Effects. J Toxicol Environ Health A. 2015;78(1):32-49. doi: 10.1080/15287394.2015.958418.]
- Yoo HS, Bradford BU, Kosyk O, Shymonyak S, Uehara T, Collins LB, Bodnar WM, Ball LM, Gold A, Rusyn I. Comparative Analysis of the Relationship Between Trichloroethylene Metabolism and Tissue-specific Toxicity among Inbred Mouse Strains: Liver Effects. J Toxicol Environ Health A. 2015;78(1):15-31. doi: 10.1080/15287394.2015.958417. [Abstract Yoo HS, Bradford BU, Kosyk O, Shymonyak S, Uehara T, Collins LB, Bodnar WM, Ball LM, Gold A, Rusyn I. Comparative Analysis of the Relationship Between Trichloroethylene Metabolism and Tissue-specific Toxicity among Inbred Mouse Strains: Liver Effects. J Toxicol Environ Health A. 2015;78(1):15-31. doi: 10.1080/15287394.2015.958417.]
- Chiu WA, Campbell JL Jr, Clewell HJ 3rd, Zhou YH, Wright FA, Guyton KZ, Rusyn I. Physiologically Based Pharmacokinetic (PBPK) Modeling of Interstrain Variability in Trichloroethylene Metabolism in the Mouse. Environ Health Perspect. 2014 May;122(5):456-63. doi: 10.1289/ehp.1307623. Epub 2014 Feb 10. [Abstract Chiu WA, Campbell JL Jr, Clewell HJ 3rd, Zhou YH, Wright FA, Guyton KZ, Rusyn I. Physiologically Based Pharmacokinetic (PBPK) Modeling of Interstrain Variability in Trichloroethylene Metabolism in the Mouse. Environ Health Perspect. 2014 May;122(5):456-63. doi: 10.1289/ehp.1307623. Epub 2014 Feb 10.] [Full Text Chiu WA, Campbell JL Jr, Clewell HJ 3rd, Zhou YH, Wright FA, Guyton KZ, Rusyn I. Physiologically Based Pharmacokinetic (PBPK) Modeling of Interstrain Variability in Trichloroethylene Metabolism in the Mouse. Environ Health Perspect. 2014 May;122(5):456-63. doi: 10.1289/ehp.1307623. Epub 2014 Feb 10.]
- Pogribny IP, Kutanzi K, Melnyk S, Kutanzi K, Melnyk S, de Conti A, Tryndyak V, Montgomery B, Pogribna M, Muskhelishvili L, Latendresse JR, James SJ, Beland FA, Rusyn I. Strain-dependent Dysregulation of One-carbon Metabolism in Male Mice Is Associated with Choline- and Folate-deficient Diet-induced Liver Injury. FASEB J. 2013 Jun;27(6):2233-43. doi: 10.1096/fj.12-227116. Epub 2013 Feb 25. [Abstract Pogribny IP, Kutanzi K, Melnyk S, Kutanzi K, Melnyk S, de Conti A, Tryndyak V, Montgomery B, Pogribna M, Muskhelishvili L, Latendresse JR, James SJ, Beland FA, Rusyn I. Strain-dependent Dysregulation of One-carbon Metabolism in Male Mice Is Associated with Choline- and Folate-deficient Diet-induced Liver Injury. FASEB J. 2013 Jun;27(6):2233-43. doi: 10.1096/fj.12-227116. Epub 2013 Feb 25.]
- Tryndyak V, de Conti A, Kobets T, Kutanzi K, Koturbash I, Han T, Fuscoe JC, Latendresse JR, Melnyk S, Shymonyak S, Collins L, Ross SA, Rusyn I, Beland FA, Pogribny IP. Interstrain Differences in the Severity of Liver Injury Induced by a Choline- and Folate-deficient Diet in Mice Are Associated with Dysregulation of Genes Involved in Lipid Metabolism. FASEB J. 2012 Nov;26(11):4592-602. doi: 10.1096/fj.12-209569. Epub 2012 Aug 7. [Abstract Tryndyak V, de Conti A, Kobets T, Kutanzi K, Koturbash I, Han T, Fuscoe JC, Latendresse JR, Melnyk S, Shymonyak S, Collins L, Ross SA, Rusyn I, Beland FA, Pogribny IP. Interstrain Differences in the Severity of Liver Injury Induced by a Choline- and Folate-deficient Diet in Mice Are Associated with Dysregulation of Genes Involved in Lipid Metabolism. FASEB J. 2012 Nov;26(11):4592-602. doi: 10.1096/fj.12-209569. Epub 2012 Aug 7.] [Full Text Tryndyak V, de Conti A, Kobets T, Kutanzi K, Koturbash I, Han T, Fuscoe JC, Latendresse JR, Melnyk S, Shymonyak S, Collins L, Ross SA, Rusyn I, Beland FA, Pogribny IP. Interstrain Differences in the Severity of Liver Injury Induced by a Choline- and Folate-deficient Diet in Mice Are Associated with Dysregulation of Genes Involved in Lipid Metabolism. FASEB J. 2012 Nov;26(11):4592-602. doi: 10.1096/fj.12-209569. Epub 2012 Aug 7.]
- Tsuchiya M, Ji C, Kosyk O, Ji C, Kosyk O, Shymonyak S, Melnyk S, Kono H, Tryndyak V, Muskhelishvili L, Pogribny IP, Kaplowitz N, Rusyn I. Interstrain Differences in Liver Injury and One-carbon Metabolism in Alcohol-fed Mice. Hepatology. 2012 Jul;56(1):130-9. doi: 10.1002/hep.25641. Epub 2012 Jun 6. [Abstract Tsuchiya M, Ji C, Kosyk O, Ji C, Kosyk O, Shymonyak S, Melnyk S, Kono H, Tryndyak V, Muskhelishvili L, Pogribny IP, Kaplowitz N, Rusyn I. Interstrain Differences in Liver Injury and One-carbon Metabolism in Alcohol-fed Mice. Hepatology. 2012 Jul;56(1):130-9. doi: 10.1002/hep.25641. Epub 2012 Jun 6.] [Full Text Tsuchiya M, Ji C, Kosyk O, Ji C, Kosyk O, Shymonyak S, Melnyk S, Kono H, Tryndyak V, Muskhelishvili L, Pogribny IP, Kaplowitz N, Rusyn I. Interstrain Differences in Liver Injury and One-carbon Metabolism in Alcohol-fed Mice. Hepatology. 2012 Jul;56(1):130-9. doi: 10.1002/hep.25641. Epub 2012 Jun 6.]
- Tryndyak VP, Latendresse JR, Montgomery B, Latendresse JR, Montgomery B, Ross SA, Beland FA, Rusyn I, Pogribny IP. Plasma MicroRNAs Are Sensitive Indicators of Inter-strain Differences in the Severity of Liver Injury Induced in Mice by a Choline- and Folate-deficient Diet. Toxicol Appl Pharmacol. 2012 Jul 1;262(1):52-9. doi: 10.1016/j.taap.2012.04.018. Epub 2012 Apr 24. [Abstract Tryndyak VP, Latendresse JR, Montgomery B, Latendresse JR, Montgomery B, Ross SA, Beland FA, Rusyn I, Pogribny IP. Plasma MicroRNAs Are Sensitive Indicators of Inter-strain Differences in the Severity of Liver Injury Induced in Mice by a Choline- and Folate-deficient Diet. Toxicol Appl Pharmacol. 2012 Jul 1;262(1):52-9. doi: 10.1016/j.taap.2012.04.018. Epub 2012 Apr 24.]
- Koturbash I, Scherhag A, Sorrentino J, Sexton K, Bodnar W, Swenberg JA, Beland FA, Pardo-Manuel Devillena F, Rusyn I, Pogribny IP. Epigenetic Mechanisms of Mouse Interstrain Variability in Genotoxicity of the Environmental Toxicant 1,3-butadiene. Toxicol Sci. 2011 Aug;122(2):448-56. doi: 10.1093/toxsci/kfr133. Epub 2011 May 20. [Abstract Koturbash I, Scherhag A, Sorrentino J, Sexton K, Bodnar W, Swenberg JA, Beland FA, Pardo-Manuel Devillena F, Rusyn I, Pogribny IP. Epigenetic Mechanisms of Mouse Interstrain Variability in Genotoxicity of the Environmental Toxicant 1,3-butadiene. Toxicol Sci. 2011 Aug;122(2):448-56. doi: 10.1093/toxsci/kfr133. Epub 2011 May 20.] [Full Text Koturbash I, Scherhag A, Sorrentino J, Sexton K, Bodnar W, Swenberg JA, Beland FA, Pardo-Manuel Devillena F, Rusyn I, Pogribny IP. Epigenetic Mechanisms of Mouse Interstrain Variability in Genotoxicity of the Environmental Toxicant 1,3-butadiene. Toxicol Sci. 2011 Aug;122(2):448-56. doi: 10.1093/toxsci/kfr133. Epub 2011 May 20.]
- Bradford BU, Lock EF, Kosyk O, Kim S, Uehara T, Harbourt D, DeSimone M, Threadgill DW, Tryndyak V, Pogribny IP, Bleyle L, Koop DR, Rusyn I. Interstrain Differences in the Liver Effects of Trichloroethylene in a Multistrain Panel of Inbred Mice. Tox Sci. 2011; 120(1): 206-217. DOI: 10.1093/toxsci/kfq362. Epub 2010 Dec 6. [Abstract Bradford BU, Lock EF, Kosyk O, Kim S, Uehara T, Harbourt D, DeSimone M, Threadgill DW, Tryndyak V, Pogribny IP, Bleyle L, Koop DR, Rusyn I. Interstrain Differences in the Liver Effects of Trichloroethylene in a Multistrain Panel of Inbred Mice. Tox Sci. 2011; 120(1): 206-217. DOI: 10.1093/toxsci/kfq362. Epub 2010 Dec 6.] [Full Text Bradford BU, Lock EF, Kosyk O, Kim S, Uehara T, Harbourt D, DeSimone M, Threadgill DW, Tryndyak V, Pogribny IP, Bleyle L, Koop DR, Rusyn I. Interstrain Differences in the Liver Effects of Trichloroethylene in a Multistrain Panel of Inbred Mice. Tox Sci. 2011; 120(1): 206-217. DOI: 10.1093/toxsci/kfq362. Epub 2010 Dec 6.]
- Pogribny IP, Starlard-Davenport A, Tryndyak VP, Han T, Ross SA, Rusyn I, Beland FA. Difference in Expression of Hepatic MicroRNAs MiR-29c, MiR-34a, MiR-155, and MiR-200b Is Associated with Strain-specific Susceptibility to Dietary Nonalcoholic Steatohepatitis in Mice. Lab Invest. 2010 Oct;90(10):1437-46. doi: 10.1038/labinvest.2010.113. Epub 2010 Jun 14. [Abstract Pogribny IP, Starlard-Davenport A, Tryndyak VP, Han T, Ross SA, Rusyn I, Beland FA. Difference in Expression of Hepatic MicroRNAs MiR-29c, MiR-34a, MiR-155, and MiR-200b Is Associated with Strain-specific Susceptibility to Dietary Nonalcoholic Steatohepatitis in Mice. Lab Invest. 2010 Oct;90(10):1437-46. doi: 10.1038/labinvest.2010.113. Epub 2010 Jun 14.]
- Harrill AH, Watkins PB, Su S, Ross PK, Harbourt DE, Stylianou IM, Boorman GA, Russo MW, Sackler RS, Harris SC, Smith PC, Tennant R, Bogue M, Paigen K, Harris C, Contractor T, Wiltshire T, Rusyn I, Threadgill DW. Mouse Population-guided Resequencing Reveals That Variants in CD44 Contribute to Acetaminophen-induced Liver Injury in Humans. Genome Res. 2009 Sep;19(9):1507-15. doi: 10.1101/gr.090241.108. Epub 2009 May 5. [Abstract Harrill AH, Watkins PB, Su S, Ross PK, Harbourt DE, Stylianou IM, Boorman GA, Russo MW, Sackler RS, Harris SC, Smith PC, Tennant R, Bogue M, Paigen K, Harris C, Contractor T, Wiltshire T, Rusyn I, Threadgill DW. Mouse Population-guided Resequencing Reveals That Variants in CD44 Contribute to Acetaminophen-induced Liver Injury in Humans. Genome Res. 2009 Sep;19(9):1507-15. doi: 10.1101/gr.090241.108. Epub 2009 May 5.] [Full Text Harrill AH, Watkins PB, Su S, Ross PK, Harbourt DE, Stylianou IM, Boorman GA, Russo MW, Sackler RS, Harris SC, Smith PC, Tennant R, Bogue M, Paigen K, Harris C, Contractor T, Wiltshire T, Rusyn I, Threadgill DW. Mouse Population-guided Resequencing Reveals That Variants in CD44 Contribute to Acetaminophen-induced Liver Injury in Humans. Genome Res. 2009 Sep;19(9):1507-15. doi: 10.1101/gr.090241.108. Epub 2009 May 5.]
- Pogribny IP, Tryndyak VP, Bagnyukova TV, Melnyk S, Montgomery B, Ross SA, Latendresse JR, Rusyn I, Beland FA. Hepatic Epigenetic Phenotype Predetermines Individual Susceptibility to Hepatic Steatosis in Mice Fed a Lipogenic Methyl-deficient Diet. J Hepatol. 2009 Jul;51(1):176-86. doi: 10.1016/j.jhep.2009.03.021. Epub 2009 May 3. [Abstract Pogribny IP, Tryndyak VP, Bagnyukova TV, Melnyk S, Montgomery B, Ross SA, Latendresse JR, Rusyn I, Beland FA. Hepatic Epigenetic Phenotype Predetermines Individual Susceptibility to Hepatic Steatosis in Mice Fed a Lipogenic Methyl-deficient Diet. J Hepatol. 2009 Jul;51(1):176-86. doi: 10.1016/j.jhep.2009.03.021. Epub 2009 May 3.] [Full Text Pogribny IP, Tryndyak VP, Bagnyukova TV, Melnyk S, Montgomery B, Ross SA, Latendresse JR, Rusyn I, Beland FA. Hepatic Epigenetic Phenotype Predetermines Individual Susceptibility to Hepatic Steatosis in Mice Fed a Lipogenic Methyl-deficient Diet. J Hepatol. 2009 Jul;51(1):176-86. doi: 10.1016/j.jhep.2009.03.021. Epub 2009 May 3.]
- Harrill AH, Ross PK, Gatti DM, Threadgill DW, Rusyn I. Population-based Discovery of Toxicogenomics Biomarkers For Hepatotoxicity Using a Laboratory Strain Diversity Pane. Tox Sci. 2009 Jul; 110(1):235-43. doi: 10.1093/toxsci/kfp096. [Abstract Harrill AH, Ross PK, Gatti DM, Threadgill DW, Rusyn I. Population-based Discovery of Toxicogenomics Biomarkers For Hepatotoxicity Using a Laboratory Strain Diversity Pane. Tox Sci. 2009 Jul; 110(1):235-43. doi: 10.1093/toxsci/kfp096.]
- Rusyn I, Gatti DM, Wiltshire T, Kleeberger SR, Threadgill DW. Toxicogenetics: Population-based Testing of Drug and Chemical Safety in Mouse Models. Pharmacogenomics. 2010 Aug; 11(8): 1127-1136. Doi: 10.2217/pgs.10.100. [Abstract Rusyn I, Gatti DM, Wiltshire T, Kleeberger SR, Threadgill DW. Toxicogenetics: Population-based Testing of Drug and Chemical Safety in Mouse Models. Pharmacogenomics. 2010 Aug; 11(8): 1127-1136. Doi: 10.2217/pgs.10.100.] [Full Text Rusyn I, Gatti DM, Wiltshire T, Kleeberger SR, Threadgill DW. Toxicogenetics: Population-based Testing of Drug and Chemical Safety in Mouse Models. Pharmacogenomics. 2010 Aug; 11(8): 1127-1136. Doi: 10.2217/pgs.10.100.]
Boris Tabakoff, University of Colorado– Denver
- Saba LM, Bennett B, Hoffman PL, Barcomb K, Ishii T, Kechris K, Tabakoff B. A Systems Genetic Analysis of Alcohol Drinking by Mice, Rats and Men: Influence of Brain GABAergic Transmission. Neuropharmacology. 2011 Jun; 60(7-8):1269-80. doi: 10.1016/j.neuropharm.2010.12.019. Epub 2010 Dec 23. [Abstract Saba LM, Bennett B, Hoffman PL, Barcomb K, Ishii T, Kechris K, Tabakoff B. A Systems Genetic Analysis of Alcohol Drinking by Mice, Rats and Men: Influence of Brain GABAergic Transmission. Neuropharmacology. 2011 Jun; 60(7-8):1269-80. doi: 10.1016/j.neuropharm.2010.12.019. Epub 2010 Dec 23.]
- Vanderlinden LA, Saba LM, Printz MP, Flodman P, Koob G, Richardson HN, Hoffman PL, Tabakoff B. Is the Alcohol Deprivation Effect Genetically Mediated? Studies with Hxb/Bxh Recombinant Inbred Rat Strains. Alcohol Clin Exp Res. 2014 Jul; 38(7):2148-57. doi: 10.1111/acer.12471. Epub 2014 Jun 24. [Abstract Vanderlinden LA, Saba LM, Printz MP, Flodman P, Koob G, Richardson HN, Hoffman PL, Tabakoff B. Is the Alcohol Deprivation Effect Genetically Mediated? Studies with Hxb/Bxh Recombinant Inbred Rat Strains. Alcohol Clin Exp Res. 2014 Jul; 38(7):2148-57. doi: 10.1111/acer.12471. Epub 2014 Jun 24.]
- Tabakoff B, Saba L, Printz M, Flodman P, Hodgkinson C, Goldman D, Koob G, Richardson HN, Kechris K, Bell RL, Hübner N, Heinig M, Pravenec M, Mangion J, Legault L, Dongier M, Conigrave KM, Whitfield JB, Saunders J, Grant B, Hoffman PL; WHO/ISBRA Study on State and Trait Markers of Alcoholism. Genetical Genomic Determinants of Alcohol Consumption in Rats and Humans. BMC Biol. 2009 Oct 27; 7:70. doi: 10.1186/1741-7007-7-70. [Abstract Tabakoff B, Saba L, Printz M, Flodman P, Hodgkinson C, Goldman D, Koob G, Richardson HN, Kechris K, Bell RL, Hübner N, Heinig M, Pravenec M, Mangion J, Legault L, Dongier M, Conigrave KM, Whitfield JB, Saunders J, Grant B, Hoffman PL; WHO/ISBRA Study on State and Trait Markers of Alcoholism. Genetical Genomic Determinants of Alcohol Consumption in Rats and Humans. BMC Biol. 2009 Oct 27; 7:70. doi: 10.1186/1741-7007-7-70.]
David Threadgill, Texas A&M University
- Threadgill DW, Hunter KW, Williams RW. Genetic Dissection of Complex and Quantitative Traits: From Fantasy to Reality via a Community Effort. Mammalian Genome. 2002; 13: 175-178. DOI: 10.1007/s00335-001-4001-Y. [Abstract Threadgill DW, Hunter KW, Williams RW. Genetic Dissection of Complex and Quantitative Traits: From Fantasy to Reality via a Community Effort. Mammalian Genome. 2002; 13: 175-178. DOI: 10.1007/s00335-001-4001-Y.]
- The Complex Trait Consortium. The Collaborative Cross, a Community Resource for the Genetic Analysis Of Complex Traits. Nature Genetics. 2004 Nov; 36(11): 1133-1137. [Abstract The Complex Trait Consortium. The Collaborative Cross, a Community Resource for the Genetic Analysis Of Complex Traits. Nature Genetics. 2004 Nov; 36(11): 1133-1137.]
- Church RJ, Gatti DM, Urban TJ, Long N, Yang X, Shi Q, Eaddy JS, Mosedale M, Ballard S, Churchill GA, Navarro V, Watkins PB, Threadgill DW, Harrill AH. Sensitivity to Hepatotoxicity Due to Epigallocatechin Gallate Is Affected by Genetic Background in Diversity Outbred Mice. Food and Chemical Toxicology. 2014; 76: 19-26. DOI: 10.1016/j.fct.2014.11.008 [Abstract Church RJ, Gatti DM, Urban TJ, Long N, Yang X, Shi Q, Eaddy JS, Mosedale M, Ballard S, Churchill GA, Navarro V, Watkins PB, Threadgill DW, Harrill AH. Sensitivity to Hepatotoxicity Due to Epigallocatechin Gallate Is Affected by Genetic Background in Diversity Outbred Mice. Food and Chemical Toxicology. 2014; 76: 19-26. DOI: 10.1016/j.fct.2014.11.008]
- Threadgill DW and Churchill GA. Ten years of the Collaborative Cross. Genetics. 2012 Feb; 190: 291-294. DOI: 10.1534/genetics.111.138032. [Abstract Threadgill DW and Churchill GA. Ten years of the Collaborative Cross. Genetics. 2012 Feb; 190: 291-294. DOI: 10.1534/genetics.111.138032.]
- Harrill AH, Watkins PB, Su S, Ross PK, Harbourt DE, Stylianou IM, Boorman GA, Russo MW, Sackler RS, Harris SC, Smith PC, Tennant R, Bogue M, Paigen K, Harris C, Contractor T, Wiltshire T, Rusyn I, Threadgill DW. Mouse Population-guided Resequencing Reveals That Variants in CD44 Contribute to Acetaminophen-induced Liver Injury in Humans. Genome Res. 2009 Sep;19(9):1507-15. doi: 10.1101/gr.090241.108. Epub 2009 May 5. [Abstract Harrill AH, Watkins PB, Su S, Ross PK, Harbourt DE, Stylianou IM, Boorman GA, Russo MW, Sackler RS, Harris SC, Smith PC, Tennant R, Bogue M, Paigen K, Harris C, Contractor T, Wiltshire T, Rusyn I, Threadgill DW. Mouse Population-guided Resequencing Reveals That Variants in CD44 Contribute to Acetaminophen-induced Liver Injury in Humans. Genome Res. 2009 Sep;19(9):1507-15. doi: 10.1101/gr.090241.108. Epub 2009 May 5.] [Full Text Harrill AH, Watkins PB, Su S, Ross PK, Harbourt DE, Stylianou IM, Boorman GA, Russo MW, Sackler RS, Harris SC, Smith PC, Tennant R, Bogue M, Paigen K, Harris C, Contractor T, Wiltshire T, Rusyn I, Threadgill DW. Mouse Population-guided Resequencing Reveals That Variants in CD44 Contribute to Acetaminophen-induced Liver Injury in Humans. Genome Res. 2009 Sep;19(9):1507-15. doi: 10.1101/gr.090241.108. Epub 2009 May 5.]
- Harrill AH, Ross PK, Gatti DM, Threadgill DW, Rusyn I. Population-based Discovery of Toxicogenomics Biomarkers for Hepatoxicity Using a Laboratory Strain Diversity Panel. Tox Sci. 2009; 110(1): 235-243. DOI: 10.1093/toxsci/kfp096. [Abstract Harrill AH, Ross PK, Gatti DM, Threadgill DW, Rusyn I. Population-based Discovery of Toxicogenomics Biomarkers for Hepatoxicity Using a Laboratory Strain Diversity Panel. Tox Sci. 2009; 110(1): 235-243. DOI: 10.1093/toxsci/kfp096.] [Full Text Harrill AH, Ross PK, Gatti DM, Threadgill DW, Rusyn I. Population-based Discovery of Toxicogenomics Biomarkers for Hepatoxicity Using a Laboratory Strain Diversity Panel. Tox Sci. 2009; 110(1): 235-243. DOI: 10.1093/toxsci/kfp096.]
- Bradford BU, Lock EF, Kosyk O, Kim S, Uehara T, Harbourt D, DeSimone M, Threadgill DW, Tryndyak V, Pogribny IP, Bleyle L, Koop DR, Rusyn I. Interstrain Differences in the Liver Effects of Trichloroethylene in a Multistrain Panel of Inbred Mice. Tox Sci. 2011; 120(1): 206-217. DOI: 10.1093/toxsci/kfq362. Epub 2010 Dec 6. [Abstract Bradford BU, Lock EF, Kosyk O, Kim S, Uehara T, Harbourt D, DeSimone M, Threadgill DW, Tryndyak V, Pogribny IP, Bleyle L, Koop DR, Rusyn I. Interstrain Differences in the Liver Effects of Trichloroethylene in a Multistrain Panel of Inbred Mice. Tox Sci. 2011; 120(1): 206-217. DOI: 10.1093/toxsci/kfq362. Epub 2010 Dec 6.] [Full Text Bradford BU, Lock EF, Kosyk O, Kim S, Uehara T, Harbourt D, DeSimone M, Threadgill DW, Tryndyak V, Pogribny IP, Bleyle L, Koop DR, Rusyn I. Interstrain Differences in the Liver Effects of Trichloroethylene in a Multistrain Panel of Inbred Mice. Tox Sci. 2011; 120(1): 206-217. DOI: 10.1093/toxsci/kfq362. Epub 2010 Dec 6.]
Nigel Walker, National Institute of Environmental Health Sciences (NIEHS)
- French JE, Gatti DM, Morgan DL, Kissling GE, Shockley KR, Knudsen GA, Shepard KG, Price HC, King D, Witt KL, Pedersen LC, Munger SC, Svenson KL, Churchill GA. Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environ Health Perspect. 2014 Nov 6. [Abstract French JE, Gatti DM, Morgan DL, Kissling GE, Shockley KR, Knudsen GA, Shepard KG, Price HC, King D, Witt KL, Pedersen LC, Munger SC, Svenson KL, Churchill GA. Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environ Health Perspect. 2014 Nov 6.]
Tim Wiltshire, University of North Carolina– Chapel Hill
Wiltshire’s lab research focuses mainly on pharmacogenetics and broad aspects of drug toxicity. They have used the mouse as an extremely useful model for this work. One of the confounding factors in the response of an organism to a drug or compound is the genetic variance on which the drug is tested. Standard models of drug testing have routinely used only one strain of mouse or rat, but this approach does not take into account the complexity of response that is apparent because of genetic variation. They have used a wide selection of inbred mouse strains, and more recently the Collaborative Cross mice, to screen for variable phenotypic responses to drug. They have focused largely on toxicity responses in in vivo mouse models, but also have championed the use of in vitro “cellular genetics” approaches to identify variable drug response. The key to understanding the variable drug response is to be able to provide associated genetic analysis and identify the genetic variation responsible. Using these mouse models they have been able to identify genes that impact specific drug response pathways.
- Frick A, Fedoriw Y, Richards K, Damania B, Parks B, Suzuki O, Benton CS, Chan E, Thomas RS, Wiltshire T. Immune Cell-based Screening Assay for Response to Anticancer Agents: Applications in Pharmacogenomics. Pharmacogenomics and personalized medicine. 2015; 8:1-18 [Abstract Frick A, Fedoriw Y, Richards K, Damania B, Parks B, Suzuki O, Benton CS, Chan E, Thomas RS, Wiltshire T. Immune Cell-based Screening Assay for Response to Anticancer Agents: Applications in Pharmacogenomics. Pharmacogenomics and personalized medicine. 2015; 8:1-18]
- Suzuki OT, Frick A, Parks BB, Trask OJ Jr, Butz N, Steffy B, Chan E, Scoville DK, Healy E, Benton C, McQuaid PE, Thomas RS, Wiltshire T. A Cellular Genetics Approach Identifies Gene-drug Interactions and Pinpoints Drug Toxicity Pathway Nodes. Front Genet. 2014 Aug 29;5:272. doi: 10.3389/fgene.2014.00272. eCollection 2014. [Abstract Suzuki OT, Frick A, Parks BB, Trask OJ Jr, Butz N, Steffy B, Chan E, Scoville DK, Healy E, Benton C, McQuaid PE, Thomas RS, Wiltshire T. A Cellular Genetics Approach Identifies Gene-drug Interactions and Pinpoints Drug Toxicity Pathway Nodes. Front Genet. 2014 Aug 29;5:272. doi: 10.3389/fgene.2014.00272. eCollection 2014.] [Full Text Suzuki OT, Frick A, Parks BB, Trask OJ Jr, Butz N, Steffy B, Chan E, Scoville DK, Healy E, Benton C, McQuaid PE, Thomas RS, Wiltshire T. A Cellular Genetics Approach Identifies Gene-drug Interactions and Pinpoints Drug Toxicity Pathway Nodes. Front Genet. 2014 Aug 29;5:272. doi: 10.3389/fgene.2014.00272. eCollection 2014.]
- The Collaborative Cross Consortium, Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, Cleak J, Durrant C, Goodstadt L, Mott R, Yalcin B, Hill C, Aylor DL, Baric RS, Bell TA, Bendt KM, Brennan J, Brooks JD, Buus RJ, Crowley JJ, Calaway JD, Calaway ME, Cholka A, Darr DB, Didion JP, Dorman A, Everett ET, Ferris MT, Mathes WF, Fu CP, Gooch TJ, Goodson SG, Gralinski LE, Hansen SD, Heise MT, Hoel J, Hua K, Kapita MC, Lee S, Lenarcic AB, Liu EY, Liu H, McMillan L, Magnuson TR, Manly KF, Miller DR, O'Brien DA, Odet F, Pakatci IK, Pan W, de Villena FP, Perou CM, Pomp D, Quackenbush CR, Robinson NN, Sharpless NE, Shaw GD, Spence JS, Sullivan PF, Sun W, Tarantino LM, Valdar W, Wang J, Wang W, Welsh CE, Whitmore A, Wiltshire T, Wright FA, Xie Y, Yun Z, Zhabotynsky V, Zhang Z, Zou F, Powell C, Steigerwalt J, Threadgill DW, Chesler EJ, Gary A. The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics. February 1, 2012 vol. 190 no. 2 389-401 [Abstract The Collaborative Cross Consortium, Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, Cleak J, Durrant C, Goodstadt L, Mott R, Yalcin B, Hill C, Aylor DL, Baric RS, Bell TA, Bendt KM, Brennan J, Brooks JD, Buus RJ, Crowley JJ, Calaway JD, Calaway ME, Cholka A, Darr DB, Didion JP, Dorman A, Everett ET, Ferris MT, Mathes WF, Fu CP, Gooch TJ, Goodson SG, Gralinski LE, Hansen SD, Heise MT, Hoel J, Hua K, Kapita MC, Lee S, Lenarcic AB, Liu EY, Liu H, McMillan L, Magnuson TR, Manly KF, Miller DR, O'Brien DA, Odet F, Pakatci IK, Pan W, de Villena FP, Perou CM, Pomp D, Quackenbush CR, Robinson NN, Sharpless NE, Shaw GD, Spence JS, Sullivan PF, Sun W, Tarantino LM, Valdar W, Wang J, Wang W, Welsh CE, Whitmore A, Wiltshire T, Wright FA, Xie Y, Yun Z, Zhabotynsky V, Zhang Z, Zou F, Powell C, Steigerwalt J, Threadgill DW, Chesler EJ, Gary A. The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population. Genetics. February 1, 2012 vol. 190 no. 2 389-401]
- Benton CS, Miller BH, Skwerer S, Suzuki O, Schultz LE, Cameron MD, Marron JS, Pletcher MT, Wiltshire T. Evaluating Genetic Markers and Neurobiochemical Analytes for Fluoxetine Response Using a Panel of Mouse Inbred Strains. Psychopharmacology (Berl). 2011 Nov 24. [Abstract Benton CS, Miller BH, Skwerer S, Suzuki O, Schultz LE, Cameron MD, Marron JS, Pletcher MT, Wiltshire T. Evaluating Genetic Markers and Neurobiochemical Analytes for Fluoxetine Response Using a Panel of Mouse Inbred Strains. Psychopharmacology (Berl). 2011 Nov 24.]
Additional Background Information
- Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, Gooch TJ, Hansen SD, Robinson NN, Shaw GD, Spence JS, Quackenbush CR, Barrick CJ, Nonneman RJ, Kim K, Xenakis J, Xie Y, Valdar W, Lenarcic AB, Wang W, Welsh CE, Fu CP, Zhang Z, Holt J, Guo Z, Threadgill DW, Tarantino LM, Miller DR, Zou F, McMillan L, Sullivan PF, Pardo-Manuel de Villena F. Analyses of Allele-specific Gene Expression in Highly Divergent Mouse Crosses Identifies Pervasive Allelic Imbalance. Nat Genet. 2015 Jan 26. [Epub ahead of print] doi: 10.1038/ng.3222. [Abstract Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, Gooch TJ, Hansen SD, Robinson NN, Shaw GD, Spence JS, Quackenbush CR, Barrick CJ, Nonneman RJ, Kim K, Xenakis J, Xie Y, Valdar W, Lenarcic AB, Wang W, Welsh CE, Fu CP, Zhang Z, Holt J, Guo Z, Threadgill DW, Tarantino LM, Miller DR, Zou F, McMillan L, Sullivan PF, Pardo-Manuel de Villena F. Analyses of Allele-specific Gene Expression in Highly Divergent Mouse Crosses Identifies Pervasive Allelic Imbalance. Nat Genet. 2015 Jan 26. [Epub ahead of print] doi: 10.1038/ng.3222.]
- Didion JP, Morgan AP, Clayshulte AM, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, Geiger TR, Gooch TJ, Garland T Jr, Harrill AH, Hunter K, McMillan L, Holt M, Miller DR, O'Brien DA, Paigen K, Pan W, Rowe LB, Shaw GD, Simecek P, Sullivan PF, Svenson KL, Weinstock GM, Threadgill DW, Pomp D, Churchill GA, Pardo-Manuel de Villena F. A Multi-megabase Copy Number Gain Causes Maternal Transmission Ratio Distortion on Mouse Chromosome 2. PLOS Genet. 2015 Feb; 11(2): e1004850. Doi: 10.1371/journal.pgen.1004850. [Abstract Didion JP, Morgan AP, Clayshulte AM, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, Geiger TR, Gooch TJ, Garland T Jr, Harrill AH, Hunter K, McMillan L, Holt M, Miller DR, O'Brien DA, Paigen K, Pan W, Rowe LB, Shaw GD, Simecek P, Sullivan PF, Svenson KL, Weinstock GM, Threadgill DW, Pomp D, Churchill GA, Pardo-Manuel de Villena F. A Multi-megabase Copy Number Gain Causes Maternal Transmission Ratio Distortion on Mouse Chromosome 2. PLOS Genet. 2015 Feb; 11(2): e1004850. Doi: 10.1371/journal.pgen.1004850.]
- Rogala AR, Morgan AP, Christensen AM, Gooch TJ, Bell TA, Miller DR, Godfrey VL, de Villena FP. The Collaborative Cross as a Resource for Modeling Human Disease: Cc011/Unc, a New Mouse Model for Spontaneoud Colitis. Mamm Genome. 2013 Dec. doi: 10.1007/s00335-013-9499-2. [Abstract Rogala AR, Morgan AP, Christensen AM, Gooch TJ, Bell TA, Miller DR, Godfrey VL, de Villena FP. The Collaborative Cross as a Resource for Modeling Human Disease: Cc011/Unc, a New Mouse Model for Spontaneoud Colitis. Mamm Genome. 2013 Dec. doi: 10.1007/s00335-013-9499-2.]
- Schmidt CW. Diversity Outbred: A New Generation of Mouse Model. Environ Health Perspect. 2015 Mar; 123(3): A64-A67. Doi: 10.1289/ehp.123-A64. [Abstract Schmidt CW. Diversity Outbred: A New Generation of Mouse Model. Environ Health Perspect. 2015 Mar; 123(3): A64-A67. Doi: 10.1289/ehp.123-A64.]
- French JE, Gatti DM, Morgan DL, Kissling GE, Shockley KR, Knudsen GA, Shepard KG, Price HC, King D, Witt KL, Pedersen LC, Munger SC, Svenson KL, Churchill GA. Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environ Health Perspect. 123: 237-245. Doi: 10.1289/ehp.1408202. [Abstract French JE, Gatti DM, Morgan DL, Kissling GE, Shockley KR, Knudsen GA, Shepard KG, Price HC, King D, Witt KL, Pedersen LC, Munger SC, Svenson KL, Churchill GA. Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environ Health Perspect. 123: 237-245. Doi: 10.1289/ehp.1408202.]
- Jackson Lab Tumor Frequency Grid. Fibrogenesis & Tissue Repair 2013, 6:18 doi:10.1186/1755-1536-6-18. [Full Text Jackson Lab Tumor Frequency Grid. Fibrogenesis & Tissue Repair 2013, 6:18 doi:10.1186/1755-1536-6-18.]
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