
This directory contains example scripts for running gapwm and other auxiliary
programs that process the gapwm output. 

gapwm.csh:          run gapwm
Fitness_PWM.csh:    compute fitness scores for each of the PWMs in the gapwm output
Avg_PWM.csh:        average PWMs from a range of generations
ROC_PWM.csh:        compute the ROC curves for a given pwm
