==========================================================================

command line: /home/li3/work/fdrMotif_dist/bin/fdrMotif -fm ./Wei_p53_ChIP.seq -fdrb 0.05 -g 50 -nbsets 10 -Cmax 10 -Imb 1 -fo ./p53.txt -fpwm ./p53_consensus.mx -bOrder 0 -minN 100 

Input (motif) sequence file:				./Wei_p53_ChIP.seq
Number of sequences in input sequence file:		542
Average input sequence length:				1186
Number of background sequence sets:			10
Number of background sequence in each set:		542
Average backg sequence length:				0
Number of starting PMWs:					1
Maximal number of iterations:				50
Upper bound of FDR is set at:				0.0500
Maximal number of binding sits in a single sequence:	10
Termination convergence criterion:			1.000000e-04
Random seed number:					123456789
Background sequences are generated from Markov model that is estimated from motif sequences

The background nucleotide frequency: a:0.2847313	c:0.2152687	g:0.2152687	t:0.2847313

job started: Mon Oct  6 14:06:07 2008

=========================================================================


Number of binding sites in 542 input sequences:				574
Average number of binding sites in 10 sets of 542 backg sequences:	28.7
Maximal difference in PWM between two consecutive iterations:		0.3413
Specified and actual computed FDR bounds:				0.0500 0.0499


Number of binding sites in 542 input sequences:				583
Average number of binding sites in 10 sets of 542 backg sequences:	29.1
Maximal difference in PWM between two consecutive iterations:		0.0516
Specified and actual computed FDR bounds:				0.0500 0.0498


Number of binding sites in 542 input sequences:				585
Average number of binding sites in 10 sets of 542 backg sequences:	29.2
Maximal difference in PWM between two consecutive iterations:		0.0065
Specified and actual computed FDR bounds:				0.0500 0.0499


Number of binding sites in 542 input sequences:				581
Average number of binding sites in 10 sets of 542 backg sequences:	29.0
Maximal difference in PWM between two consecutive iterations:		0.0015
Specified and actual computed FDR bounds:				0.0500 0.0499


Number of binding sites in 542 input sequences:				581
Average number of binding sites in 10 sets of 542 backg sequences:	29.0
Maximal difference in PWM between two consecutive iterations:		0.0004
Specified and actual computed FDR bounds:				0.0500 0.0499


Number of binding sites in 542 input sequences:				581
Average number of binding sites in 10 sets of 542 backg sequences:	29.0
Maximal difference in PWM between two consecutive iterations:		0.0013
Specified and actual computed FDR bounds:				0.0500 0.0499


Number of binding sites in 542 input sequences:				581
Average number of binding sites in 10 sets of 542 backg sequences:	29.0
Maximal difference in PWM between two consecutive iterations:		0.0001
Specified and actual computed FDR bounds:				0.0500 0.0499


finished: Mon Oct  6 14:06:54 2008

