prefix = /uhome/li3/Tracy_mEM/src/coMOTIF
exec_prefix = ${prefix}
bindir = ${exec_prefix}/bin

all:    run.csh

run.csh:
	echo "#!/bin/csh" > $@
	echo >> $@
	echo "$(bindir)/coMOTIF -fseq ../Data/simulated_hnf4_hnf1_104_918_292.fa -em 500 -fpwm0 ../Data/hnf4_hnf1.mx -fbackg ../Data/mm9_10mer_freq.txt -minF 0.05 -posWt 0 -fparm ../Data/parameters.txt" >> $@
	chmod a+x $@

distclean:
	rm -f run.csh

clean:
	rm -f run.csh

install:
