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Publications

Centers for Oceans and Human Health

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2004

  • Fleming LE, Solo GH, Elmir S, Shibata T, Squicciarini D, Jr., Quirino W, Arguello M, Van De Bogart G. 2004. A pilot study of microbial contamination of subtropical recreational waters. Fla J Environ Health 184:29.
  • Judd N, Griffith WC, Faustman EM. 2004. Contribution of pcb exposure from fish consumption to total dioxin-like dietary exposure. Regul Toxicol Pharmacol 40(2):125-135.
  • Shibata T, Solo-Gabriele HM, Fleming LE, Elmir S. 2004. Monitoring marine recreational water quality using multiple microbial indicators in an urban tropical environment. Water Res 38(13):3119-3131.
  • Trainer VL, Bill BD. 2004. Characterization of a domoic acid binding site from Pacific razor clam. Aquat Toxicol 69(2):125-32.

2005

  • Acinas SG, Sarma-Rupavtarm R, Klepac-Ceraj V, Polz MF. 2005. PCR induced sequence artifacts and bias: insights from two 16S rRNA clone libraries constructed from the same sample. Appl Environ Microbiol 71:8966-8969.
  • Anderson DM, Keafer BA, McGillicuddy DJ, Mickelson MJ, Keay KE, Libby PS, Manning JP, Mayo CA, Whittaker DK, Hickey JM, He R, Lynch DR, Smith KW. 2005. Initial observations of the 2005 Alexandrium fundyense bloom in southern New England: General patterns and mechanisms. Deep-Sea Research II 52:2856-2876.
  • Cox PA, Banack SA, Murch SJ, Rasmussen U, Tien G, Bidigare RR, Metcalf JS, Morrison LF, Codd GA, Bergman B. 2005. Diverse taxa of cyanobacteria produce b-N-methylamino-L-alanine, a neurotoxic amino acid. Proc Natl Acad Sci USA 102: 5074-5078.  
  • Cox PA, Banack SA, Murch SJ, Nunn P, Bradley W, Mash D, Papapetropoulos S, Olaf L, Conradi S, Bergman B, Rasmussen U, Bidigare R, Codd G, Metcalf JS, Johnson H, Speth R, Weiss JH. 2005. Reply to "Lack of beta-methylamino-L-Alanine in brain from controls, AD, or Chamorros with PDC". Neurology
  • Dickey TD, Bidigare RR. 2005. Interdisciplinary oceanographic observations: The wave of the future. Sci Mar 69 (Suppl.1): 23-42.
  • Furlong CE, Stevens RC, Soelberg SD, Yee N, Geiss G, Katze MG, Near S, Yee S, Chinowsky T. 2005. Adaptation of near real time biosensor systems for monitoring cabin air quality. Contaminated Air Protection Conference: Proceedings of a Conference, held at Imperial College, London, 20-21 April 2005, Winder, C., editor, University of New South Wales, Sydney, 255-270.
  • Judd NL, Drew CH, Acharya C, Mitchell TA, Donatuto JL, Burns GW, Burbacher TM, Faustman EM, Marine Resources for Future G. 2005. Framing scientific analyses for risk management of environmental hazards by communities: Case studies with seafood safety issues. Environ Health Perspect 113(11):1502-1508.
  • Lagier MJ, Scholin CA, Fell JW, Wang J, Goodwin KD. 2005. An electrochemical RNA hybridization assay for detection of the fecal indicator bacterium escherichia coli. Mar Pollut Bull 50(11):1251-1261.
  • Soelberg SD, Chinowsky T, Geiss G, Spinelli CB, Stevens R, Near S, Kauffman P, Yee S, Furlong CE. 2005. A portable surface plasmon resonance sensor system for real-time monitoring of small to large analytes. J Ind Microbiol Biotechnol 32(11-12):669-674.
  • Stotts S, Nigro O, Fowler TL, Fujioka RS, Steward GF. 2005. Virulence and antibiotic resistance gene combinations among Staphylococcus aureus isolates from coastal waters of Oahu, Hawaii. Journal of Young Investigators 16(2).
  • Thompson JT, Marcelino L, Polz MF. 2005. Diversity and sources of human bacterial pathogens and overview of methods of their detection and quantification. In: Shimshon Belkin and Rita Colwell (Eds.), Ocean and Health: Pathogens in the Marine Environment. Springer. p. 464.
  • Wang GY, Tang WP, Bidigare RR. 2005. Terpenoids as therapeutic drugs and pharmaceutical agents. In: Natural products as therapeutical drugs and preventive medicines (L. Zhang and A. L. Demain, Eds.), Humana Press, New Jersey, pp. 191-221.

2006

  • Becker JW, Brandon ML, Rappé MS. 2006. Cultivating microorganisms from dilute aquatic environments: melding traditional methodology with new cultivation techniques and molecular methods. Manual of Environmental Microbiology, 3rd Edition. ASM Press.
  • Betancourt W, Fujioka R. 2006. Bacteroides as reliable molecular markers of sewage contamination in Hawaii’s environmental water. Water Science and Technology 54:(3)101-107.
  • Bienfang PK, Bidigare RR, Laws EA, Moeller P. Ciguatera. In Walsh, P.J., S.L. Smith, L.E. Fleming, H. Solo-Gabriele, W.H. Gerwick (eds.) in press. Oceans and Human Health: Risks and Remedies from the Sea, Elsevier Science Publishers, New York.
  • Block CN, Shibata T, Solo-Gabriele HM, Townsend TG. 2006. Use of handheld X-ray fluorescence spectrometry units for identification of arsenic in treated wood. Environmental Pollution 148(2):627-33.
  • Brand LE, Compton A. 2006. Long-term increase in Karenia brevis abundance along the southwest Florida coast. Harmful Algae Harmful Algae 7: 232-252.
  • Brandon ML, JW Becker, Rappé MS. 2006. Isolation of aquatic microorganisms via high throughput cultivation methods. Molecular Microbial Ecology Manual, 3rd Edition.
  • Dubey B, Solo-Gabriele HM, Townsend TG. 2006. Quantities of Arsenic-Treated Wood in Demolition Debris Generated by Hurricane Katrina. Environ Sci & Technol 41(5):1533-1536.
  • Erdner DL, Anderson DM. 2006. Global transcriptional profiling of the toxic dinoflagellate alexandrium fundyense using massively parallel signature sequencing. BMC Genomics 7:88.
  • Fiechter J, Steffen KL, Mooers CN, Haus BK. 2006. Hydrodynamics and sediment transport in a southeast Florida tidal inlet. Estuar Coast Shelf Sci 70(1-2):297-306.
  • Fleisher JM, Kay D. 2006. Risk perception bias, self-reporting of illness, and the validity of reported results in an epidemiologic study of recreational water associated illnesses. Mar Pollut Bull 52(3):264-268.
  • Fleming LE, Broad K, Clement A, Dewailly E, Elmir S, Knap A, Pomponi SA, Smith S, Solo Gabriele H, Walsh P. 2006. Oceans and human health: Emerging public health risks in the marine environment. Mar Pollut Bull 53(10-12):545-560.
  • Fleming LE, Laws E. 2006. The Overview of Oceans and Human. Oceanography 19(2):18-23.
  • Fujioka, RS, Unutoa TM. 2006. Comparative stability and growth requirements of S. aureus and fecal indicator bacteria in seawater. Water Science and Technology 54(3):169-175.
  • Giordano G, White CC, Mcconnachie LA, Fernandez C, Kavanagh TJ, Costa LG. 2006. Neurotoxicity of domoic acid in cerebellar granule neurons in a genetic model of glutathione deficiency. Mol Pharmacol 70(6):2116-2126.
  • Hou A, Laws EA, Gambrell RP, Bae H-S, Tan M, DeLaune RD, Li Y, Roberts H. 2006. Pathogens Indicator Microbes and Heavy Metals in Lake Pontchartrain Following Hurricane Katrina. Environmental Science and Technology 40(19):5904-5910.
  • Hunt DE, Klepac-Ceraj V, Acinas SG, Gauthier C, Bertilsson S, Polz MF. 2006. Evaluation of 23S rRNA PCR Primers for use in Phylogenetic Studies of Bacterial Diversity. Appl. Environ. Microbiol 72:2221-2225.
  • Klepac-Ceraj V, Ceraj I, Polz MF. 2006. CLUSTERER: extendable java application for sequence grouping and cluster analyses. Online J. Bioinf 7:15-21.
  • Laws, E. A. 2006. Case study: Cholera. Oceanography 19(2): 81-83.
  • Marcelino L, Backman V, Donaldson A, Steadman C, Thompson JR, Paccocha-Preheim S, Lien C, Lim E, Veneziano D, Polz MF. 2006. Accurate identification of low abundant targets amidst similar sequences by revealing hidden correlations in oligonucleotide microarray data. Proc Natl Acad Sci USA 103(37):13629-13634.
  • Messerli SM, Greenberg RM. 2006. Cnidarian toxins acting on voltage-gated ion channels. Marine Drugs 4:70-81.
  • Olascoaga MJ, Rypina, Ii, Brown MG, Beron-Vera FJ, Kocak H, Brand LE, Halliwell GR, Shay LK. 2006. Persistent transport barrier on the west Florida shelf. Geophys Res Lett 33(22):L22603.
  • Patel MR, Scheffler BE, Wang L, Willett KL. 2006. Effects of benzo(a)pyrene exposure on killifish (fundulus heteroclitus) aromatase activities and mRNA. Aquat Toxicol 77(3):267-278.
  • Polz MF, Hunt DE, Preheim SP, Weinreich DM. 2006. Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Phil Trans R Soc Lond B 361:2009-2021.
  • Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc Natl Acad Sci U S A. 103(32):12115-12120.
  • Toledo G, Green W, Gonzalez RA, Christoffersen L, Podar M, Chang HW, Hemscheidt T, Trapido-Rosenthal H, Short JM, Bidigare RR, Mathur EJ. 2006. Case Study: High throughput cultivation for isolation of novel marine microorganisms. Oceanography 19(2):120-125.
  • Wang L, Scheffler BE, Willett KL. 2006. Cyp1c1 messenger RNA expression is inducible by benzo[a]pyrene in fundulus heteroclitus embryos and adults. Toxicol Sci 93(2):331-340.
  • Yu X, Griffith WC, Hanspers K, Dillman JF, 3rd, Ong H, Vredevoogd MA and Faustman EM. 2006. A system-based approach to interpret dose- and time-dependent microarray data: Quantitative integration of gene ontology analysis for risk assessment. Toxicol Sci 92(2):560-577.

2007

  • An T, Kumar TK, Wang M, Liu L, Lay JO, Jr., Liyanage R, Berry J, Gantar M, Marks V, Gawley RE, Rein KS. 2007. Structures of pahayokolides a and b, cyclic peptides from a lyngbya sp. J Nat Prod 70(5):730-735.
  • Baums IB, Goodwin KD, Kiesling T, Wanless D, Diaz MR, Fell JW. 2007. Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand. Mar Pollut Bull 54(5):521-536.
  • Block CN, Shibata T, Solo-Gabriele HM, Townsend TG. 2007. Use of handheld x-ray fluorescence spectrometry units for identification of arsenic in treated wood. Environ Pollut. 148(2):627-633.
  • Brand LE, Compton A. 2007. Long-term increase in karenia brevis abundance along the southwest Florida coast. Harmful Algae 6(2):232-252.
  • Chinowsky TM, Soelberg SD, Baker P, Swanson NR, Kauffman P, Mactutis A, Grow MS, Atmar R, Yee SS, Furlong CE. 2007. Portable 24-analyte surface plasmon resonance. Instruments for rapid, versatile biodetection. Biosen and Bioelectron 22(9-10):2268-2275.
  • Dubey B, Solo-Gabriele HM, Townsendt TG. 2007. Quantities of arsenic-treated wood in demolition debris generated by hurricane Katrina. Environ Sci Technol 41(5):1533-1536.
  • Elmir SM, Wright ME, Abdelzaher A, Solo-Gabriele HM, Fleming LE, Miller G, Rybolowik M, Peter Shih MT, Pillai SP, Cooper JA, Quaye EA. 2007. Quantitative evaluation of bacteria released by bathers in marine water. Water Res 41(1):3-10.
  • Giordano G, White CC, Mohar I, Kavanagh TJ, Costa LG. 2007. Glutathione levels modulate domoic acid induced apoptosis in mouse cerebellar granule cells. Toxicol Sci 100(2):433-444.
  • Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. 2007. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 8(7):R143.
  • LaGier MJ, Fell JW, Goodwin KD. 2007. Electrochemical detection of harmful algae and other microbial contaminants in coastal waters using hand-held biosensors. Mar Pollut Bull. 54(6):757-770.
  • Laws EA. 2007. Climate change, oceans, and human health. Ocean Yearbook 21.
  • Pope WH, Weigele PR, Chang J, Pedulla ML, Ford ME, Houtz JM, Jiang W, Chiu W, Hatfull GF, Hendrix RW, King J. 2007. Genome sequence, structural proteins, and capsid organization of the cyanophage syn5: A "horned" bacteriophage of marine synechococcus. J Mol Biol 368(4):966-981.
  • Shibata T, Solo-Gabriele HM, Fleming LE, Cai Y, Townsend TG. 2007. A mass balance approach for evaluating leachable arsenic and chromium from an in-service CCA-treated wood structure. Science of the Total Environment 372:624-635.
  • Shimeta J, Gast RJ, Rose JM. 2007. Community structure of marine sedimentary protists in relation to flow and grain size. Aquatic Microbial Ecology 68:91-104.
  • Sinigalliano CD, Gidley ML, Shibata T, Whitman D, Dixon TH, Laws E, Hou A, Bachoon D, Brand L, Amaral-Zettler L, Gast RJ, Steward GF, Nigro OD, Fujioka R, Betancourt WQ, Vithanage G, Mathews J, Fleming LE, Solo-Gabriele HM. 2007. Impacts of hurricanes Katrina and Rita on the microbial landscape of the New Orleans area. Proc Natl Acad Sci USA 104(21):9029-9034.
  • Stevens RC, Soelberg SD, Eberhart B-TL, Spencer S, Wekell JC, Chinowsky TM, Trainer VL, Furlong CE. 2007. Detection of the toxin domoic acid from clam extracts using a portable surface plasmon resonance biosensor. Harmful Algae 6:166-17.
  • Vogel C, Rogerson A, Schatz S, Laubach H, Tallman A, Fell J. 2007. Prevalence of yeasts in beach sand at three bathing beaches in south Florida. Water Res 41(9):1915-1920.
  • Weigele PR, Pope WH, Pedulla ML, Houtz JM, Smith AL, Conway JF, King J, Hatfull GF, Lawrence JG, Hendrix RW. 2007. Genomic and structural analysis of syn9, a cyanophage infecting marine prochlorococcus and synechococcus. Environ Microbiol 9(7):1675-1695.
  • Workman M, Nigro OD, Steward GF. 2007. Identification of prophages in coastal water isolates of Staphylococcus aureus. Journal of Young Investigators 16(2).

2008

  • Amaral-Zettler LA, Rocca JD, Lamontagne MG, Dennett MR, Gast RJ. 2008. Changes in microbial community structure in the wake of hurricanes Katrina and Rita. Environ Sci Technol 42(24):9072-9078.
  • Anderson DM, Burkholder JM, Cochlan WP, Glibert PM, Gobler CJ, Heil CA, Kudela R, Parsons ML, Rensel JE, Townsend DW, Trainer VL, Vargo GA. 2008. Harmful algal blooms and eutrophication: Examining linkages from selected coastal regions of the united states. Harmful Algae 8(1):39-53.
  • Bogomolni AL, Gast RJ, Ellis JC, Dennett M, Pugliares KR, Lentell BJ, Moore MJ. 2008. Victims or vectors: A survey of marine vertebrate zoonoses from coastal waters of the northwest atlantic. Dis Aquat Organ 81(1):13-38.
  • Dethlefsen L, Huse S, Sogin ML, Relman DA. 2008. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16s RRNA sequencing. PLoS Biol 6(11):e280.
  • Dong W, Wang L, Thornton C, Scheffler BE, Willett KL. 2008. Benzo(a)pyrene decreases brain and ovarian aromatase MRNA expression in fundulus heteroclitus. Aquat Toxicol 88(4):289-300.
  • Dong W, Willett KL. 2008. Local expression of cyp19a1 and cyp19a2 in developing and adult killifish (fundulus heteroclitus). Gen Comp Endocrinol 155(2):307-317.
  • Erdner DL, Dyble J, Parsons ML, Stevens RC, Hubbard KA, Wrabel ML, Moore SK, Lefebvre KA, Anderson DM, Bienfang P, Bidigare RR, Parker MS, Moeller P, Brand LE, Trainer VL. 2008. Centers for oceans and human health: A unified approach to the challenge of harmful algal blooms. Environ Health 7 Suppl 2:S2.
  • Fleming LE, Levis S, Leblanc WG, Dietz NA, Arheart KL, Wilkinson JD, Clark J, Serdar B, Davila EP, Lee DJ. 2008. Earlier age at menopause, work, and tobacco smoke exposure. Menopause 15(6):1103-1108.
  • Friedman MA, Fleming LE, Fernandez M, Bienfang P, Schrank K, Dickey R, Bottein MY, Backer L, Ayyar R, Weisman R, Watkins S, Granade R, Reich A. 2008. Ciguatera fish poisoning: Treatment, prevention and management. Mar Drugs 6(3):456-479.
  • Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Relman DA, Sogin ML. 2008. Exploring microbial diversity and taxonomy using SSU RRNA hypervariable tag sequencing. PLoS Genet 4(11):e1000255.
  • Keijser BJF, Zaura E, Huse SM, Van Der Vossen J, Schuren FHJ, Montijn RC, Ten Cate JM, Crielaard W. 2008. Pyrosequencing analysis of the oral microflora of healthy adults. Journal of Dental Research 87(11):1016-1020.
  • Kirkpatrick B, Currier R, Nierenberg K, Reich A, Backer LC, Stumpf R, Fleming L, Kirkpatrick G. 2008. Florida red tide and human health: A pilot beach conditions reporting system to minimize human exposure. Sci Total Environ 402(1):1-8.
  • Kite-Powell HL, Fleming LE, Backer LC, Faustman EM, Hoagland P, Tsuchiya A, Younglove LR, Wilcox BA, Gast RJ. 2008. Linking the oceans to public health: Current efforts and future directions. Environ Health 7 Suppl 2:S6.
  • Kroth PG, Chiovitti A, Gruber A, Martin-Jezequel V, Mock T, Parker MS, Stanley MS, Kaplan A, Caron L, Weber T, Maheswari U, Armbrust EV, Bowler C. 2008. A model for carbohydrate metabolism in the diatom phaeodactylum tricornutum deduced from comparative whole genome analysis. PLoS One. 3(1):e1426.
  • Lasek-Nesselquist E, Bogomolni AL, Gast RJ, Welch DM, Ellis JC, Sogin ML, Moore MJ. 2008. Molecular characterization of giardia intestinalis haplotypes in marine animals: Variation and zoonotic potential. Dis Aquat Organ 81(1):39-51.
  • Laws EA, Fleming LE, Stegeman JJ. 2008. Centers for Oceans and Human Health: Contributions to an emerging discipline. Introduction. Environ Health 7 Suppl 2:S1.
  • Mahdi LE, Statzell-Tallman A, Fell JW, Brown MV and Donachie SP. 2008. Sympodiomycopsis lanaiensis sp. Nov., a basidiomycetous yeast (ustilaginomycotina: Microstromatales) from marine driftwood in Hawai’i. FEMS Yeast Res 8(8):1357-1363.
  • Mendoza WG, Mead RN, Brand LE, Shea D. 2008. Determination of brevetoxin in recent marine sediments. Chemosphere 73(8):1373-1377
  • Moore SK, Trainer VL, Mantua NJ, Parker MS, Laws EA, Backer LC, Fleming LE. 2008. Impacts of climate variability and future climate change on harmful algal blooms and human health. Environ Health  7 Suppl 2:S4.
  • Olascoaga MJ, Beron-Vera FJ, Brand LE, Kocak H. 2008. Tracing the early development of harmful algal blooms on the west Florida shelf with the aid of lagrangian coherent structures. J Geophys Res 113(c12):c12014.
  • Parker MS, Mock T, Armbrust EV. 2008. Genomic insights into marine microalgae. Annu Rev Genet. 42:619-645.
  • Perez R, Liu L, Lopez J, An T, Rein KS. 2008. Diverse bacterial pks sequences derived from okadaic acid-producing dinoflagellates. Mar Drugs 6(2):164-179.
  • Scherer AC, Tsuchiya A, Younglove LR, Burbacher TM, Faustman EM. 2008. Comparative analysis of state fish consumption advisories targeting sensitive populations. Environ Health Perspect 116(12):1598-1606.
  • Stevens RC, Soelberg SD, Near S, Furlong CE. 2008. Detection of cortisol in saliva with a flow-filtered, portable surface plasmon resonance biosensor system. Anal Chem 80(17):6747-6751.
  • Stewart JR, Gast RJ, Fujioka RS, Solo-Gabriele HM, Meschke JS, Amaral-Zettler LA, Del Castillo E, Polz MF, Collier TK, Strom MS, Sinigalliano CD, Moeller PD, Holland AF. 2008. The coastal environment and human health: Microbial indicators, pathogens, sentinels and reservoirs. Environ Health 7 Suppl 2:S3.
  • Tsuchiya A, Hardy J, Burbacher TM, Faustman EM, Marien K. 2008. Fish intake guidelines: Incorporating n-3 fatty acid intake and contaminant exposure in the Korean and Japanese communities. Am J Clin Nutr 87(6):1867-1875.
  • Tsuchiya A, Hinners TA, Burbacher TM, Faustman EM, Marien K. 2008. Mercury exposure from fish consumption within the Japanese and Korean communities. J Toxicol Environ Health A 71(15):1019-1031.
  • Watkins SM, Reich A, Fleming LE, Hammond R. 2008. Neurotoxic shellfish poisoning. Mar Drugs 6(3):431-455.
  • Yu X, Robinson JF, Gribble E, Hong SW, Sidhu JS, Faustman EM. 2008. Gene expression profiling analysis reveals arsenic-induced cell cycle arrest and apoptosis in p53-proficient and p53-deficient cells through differential gene pathways. Toxicol Appl Pharmacol 233(3):389-403.
  • Zhu S, Li L, Thornton C, Carvalho P, Avery BA, Willett KL. 2008. Simultaneous determination of benzo[a]pyrene and eight of its metabolites in fundulus heteroclitus bile using ultra-performance liquid chromatography with mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci 863(1):141-149.

2009

  • Abdelzaher AM, Solo-Gabriele HM, Palmer CJ, Scott TM. 2009. Simultaneous concentration of enterococci and coliphage from marine waters using a dual layer filtration system. J Environ Qual 38(6):2468-2473.
  • Amaral-Zettler LA, Mccliment EA, Ducklow HW, Huse SM. 2009. A method for studying protistan diversity using massively parallel sequencing of v9 hypervariable regions of small-subunit ribosomal RNAgenes. PLoS One 4(7):e6372.
  • Anderson DM. 2009. Approaches to monitoring, control and management of harmful algal blooms (HABs). Ocean Coast Manag 52(7):342.
  • Antonopoulos DA, Huse SM, Morrison HG, Schmidt TM, Sogin ML, Young VB. 2009. Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun 77(6):2367-2375.
  • Beron-Vera FJ and Olascoaga MJ. 2009. An assessment of the importance of chaotic stirring and turbulent mixing on the west Florida shelf. J Phys Oceanogr 39(7):1743-1755.
  • Boehm AB, Ashbolt NJ, Colford JM, Jr., Dunbar LE, Fleming LE, Gold MA, Hansel JA, Hunter PR, Ichida AM, Mcgee CD, Soller JA, Weisberg SB. 2009. A sea change ahead for recreational water quality criteria. J Water Health 7(1):9-20.
  • Boehm AB, Griffith J, Mcgee C, Edge TA, Solo-Gabriele HM, Whitman R, Cao Y, Getrich M, Jay JA, Ferguson D, Goodwin KD, Lee CM, Madison M, Weisberg SB. 2009. Faecal indicator bacteria enumeration in beach sand: A comparison study of extraction methods in medium to coarse sands. J Appl Microbiol 107(5):1740-1750.
  • Cleland B, Tsuchiya A, Kalman DA, Dills R, Burbacher TM, White JW, Faustman EM, Marien K. 2009. Arsenic exposure within the Korean community (United States) based on dietary behavior and arsenic levels in hair, urine, air, and water. Environ Health Perspect 117(4):632-638.
  • Elmir SM, Shibata T, Solo-Gabriele HM, Sinigalliano CD, Gidley ML, Miller G, Plano LR, Kish J, Withum K, Fleming LE. 2009. Quantitative evaluation of enterococci and bacteroidales released by adults and toddlers in marine water. Water Res 43(18):4610-4616.
  • Fleming LE, Bean JA, Kirkpatrick B, Cheng YS, Pierce R, Naar J, Nierenberg K, Backer LC, Wanner A, Reich A, Zhou Y, Watkins S, Henry M, Zaias J, Abraham WM, Benson J, Cassedy A, Hollenbeck J, Kirkpatrick G, Clarke T, Baden DG. 2009. Exposure and effect assessment of aerosolized red tide toxins (brevetoxins) and asthma. Environ Health Perspect 117(7):1095-1100.
  • Giordano G, Li L, White CC, Farin FM, Wilkerson HW, Kavanagh TJ, Costa LG. 2009. Muscarinic receptors prevent oxidative stress-mediated apoptosis induced by domoic acid in mouse cerebellar granule cells. Journal of Neurochemistry 109(2):525-538.
  • Hackett JD, Tong MM, Kulis DM, Fux E, Hess P, Bire R, Anderson DM. 2009. Dsp toxin production de novo in cultures of dinophysis acuminata (dinophyceae) from North America. Harmful Algae 8(6):873-879.
  • Hoagland P, Jin D, Polansky LY, Kirkpatrick B, Kirkpatrick G, Fleming LE, Reich A, Watkins SM, Ullmann SG, Backer LC. 2009. The costs of respiratory illnesses arising from Florida gulf coast karenia brevis blooms. Environ Health Perspect 117(8):1239-1243.Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB. 2009. Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environ Microbiol 11(5):1292-1302.
  • Krogstad FTO, Griffith WC, Vigoren EM, Faustman EM. 2009. Re-evaluating blue mussel depuration rates in 'dynamics of the phycotoxin domoic acid: Accumulation and excretion in two commercially important bivalves'. Journal of Applied Phycology 21(6):745-746.
  • Lasek-Nesselquist E, Welch DM, Thompson RC, Steuart RF, Sogin ML. 2009. Genetic exchange within and between assemblages of giardia duodenalis. J Eukaryot Microbiol 56(6):504-518.
  • Lefebvre KA, Tilton SC, Bammler TK, Beyer RP, Srinouanprachan S, Stapleton PL, Farin FM, Gallagher EP. 2009. Gene expression profiles in zebrafish brain after acute exposure to domoic acid at symptomatic and asymptomatic doses. Toxicol Sci 107(1):65-77.
  • Lerczak JA, Geyer WR, Ralston DK. 2009. The temporal response of the length of a partially stratified estuary to changes in river flow and tidal amplitude. J Phys Oceanogr. 39(4):915-933.
  • Mccauley LaR, Erdner DL, Nagai S, Richlen ML, Anderson DM. 2009. Biogeographic analysis of the globally distributed harmful algal bloom species alexandrium minutum (dinophyceae) based on rRNA gene sequences and microsatellite markers. Journal of Phycology 45(2):454-463.
  • Moustafa A, Loram JE, Hackett JD, Anderson DM, Plumley FG, Bhattacharya D. 2009. Origin of saxitoxin biosynthetic genes in cyanobacteria. PLoS One 4(6):e5758.
  • Ortega C, Solo-Gabriele HM, Abdelzaher A, Wright M, Deng Y, Stark LM. 2009. Correlations between microbial indicators, pathogens, and environmental factors in a subtropical estuary. Mar Pollut Bull 58(9):1374-1381.
  • Richter RJ, Jarvik GP, Furlong CE. 2009. Paraoxonase 1 (pon1) status and substrate hydrolysis. Toxicol Appl Pharmacol 235(1):1-9.
  • Robinson JF, Yu X, Hong S, Griffith WC, Beyer R, Kim E, Faustman EM. 2009. Cadmium-induced differential toxicogenomic response in resistant and sensitive mouse strains undergoing neurulation. Toxicol Sci 107(1):206-219.
  • Rose JM, Gast RJ, Bogomolni A, Ellis JC, Lentell BJ, Touhey K, Moore M. 2009. Occurrence and patterns of antibiotic resistance in vertebrates off the northeastern united states coast. FEMS Microbiol Ecol 67(3):421-431.
  • Scorzetti G, Brand LE, Hitchcock GL, Rein KS, Sinigalliano CD, Fell JW. 2009. Multiple simultaneous detection of harmful algal blooms (habs) through a high throughput bead array technology, with potential use in phytoplankton community analysis. Harmful Algae. 8(2):196-211.
  • Scott CP, Vanwye J, Mcdonald MD and Crawford DL. 2009. Technical analysis of cDNA microarrays. PLoS One. 4(2):e4486.
  • Sinigalliano CD, Winshell J, Guerrero MA, Scorzetti G, Fell JW, Eaton RW, Brand L, Rein KS. 2009. Viable cell sorting of dinoflagellates by multiparametric flow cytometry. Phycologia  48(4):249-257.
  • Soelberg SD, Stevens RC, Limaye AP, Furlong CE. 2009. Surface plasmon resonance detection using antibody-linked magnetic nanoparticles for analyte capture, purification, concentration, and signal amplification. Anal Chem 81(6):2357-2363.
  • Tsuchiya A, Hinners TA, Krogstad F, White JW, Burbacher TM, Faustman EM, Marien K. 2009. Longitudinal mercury monitoring within the Japanese and Korean communities (United States): Implications for exposure determination and public health protection. Environ Health Perspect 117(11):1760-1766.
  • Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. 2009. A core gut microbiome in obese and lean twins. Nature 457(7228):480-484.
  • Wills LP, Zhu S, Willett KL, Di Giulio RT. 2009. Effect of cyp1a inhibition on the biotransformation of benzo[a]pyrene in two populations of fundulus heteroclitus with different exposure histories. Aquat Toxicol 92(3):195-201.
  • Wright ME, Solo-Gabriele HM, Elmir S, Fleming LE. 2009. Microbial load from animal feces at a recreational beach. Mar Pollut Bull 58(11):1649-1656.
  • Xu J, Yin KD, Ho AYT, Lee JHW, Anderson DM, Harrison PJ. 2009. Nutrient limitation in hong kong waters inferred from comparison of nutrient ratios, bioassays and p-33 turnover times. Marine Ecology Progress Series 388:81-97.
  • Yu X, Hong S, Moreira EG, Faustman EM. 2009. Improving in vitro sertoli cell/gonocyte co-culture model for assessing male reproductive toxicity: Lessons learned from comparisons of cytotoxicity versus genomic responses to phthalates. Toxicol Appl Pharmacol 239(3):325-336.
  • Zaura E, Keijser BJ, Huse SM, Crielaard W. 2009. Defining the healthy "core microbiome" of oral microbial communities. BMC Microbiol 9:259.

2010

  • Abdelzaher AM, Wright ME, Ortega C, Solo-Gabriele HM, Miller G, Elmir S, Newman X, Shih P, Bonilla JA, Bonilla TD, Palmer CJ, Scott T, Lukasik J, Harwood VJ, Mcquaig S, Sinigalliano C, Gidley M, Plano LR, Zhu X, Wang JD, Fleming LE. 2010. Presence of pathogens and indicator microbes at a non-point source subtropical recreational marine beach. Appl Environ Microbiol 76(3):724-732.
  • An T, Winshell J, Scorzetti G, Fell JW, Rein KS. 2010. Identification of okadaic acid production in the marine dinoflagellate prorocentrum rhathymum from Florida bay. Toxicon. 55(2-3):653-657.
  • Bauer M, Hoagland P, Leschine TM, Blount BG, Pomeroy CM, Lampl LL, Scherer CW, Ayres DL, Tester PA, Sengco MR, Sellner KG, Schumacker J. 2010. The importance of human dimensions research in managing harmful algal blooms. Frontiers in Ecology and the Environment 8(2):75-83.
  • Brand LE, Pablo J, Compton A, Hammerschlag N, Mash DC. 2010. Cyanobacterial blooms and the occurrence of the neurotoxin beta-n-methylamino-l-alanine (BMAA) in south Florida aquatic food webs. Harmful Algae 9(6):620-635.
  • Carvalho GA, Minnett PJ, Fleming LE, Banzon VF, Baringer W. 2010. Satellite remote sensing of harmful algal blooms: A new multi-algorithm method for detecting the Florida red tide (karenia brevis). Harmful Algae 9(5):440-448.
  • Connolly TP, Hickey BM, Geier SL, Cochlan WP. 2010. Processes influencing seasonal hypoxia in the northern California current system. J Geophys Res. 115:C03021.
  • Costa LG, Giordano G, Faustman EM. 2010. Domoic acid as a developmental neurotoxin. Neurotoxicology. 31(5):409-423.
  • Diaz MR, Jacobson JW, Goodwin KD, Dunbar SA, Fell JW. 2010. Molecular detection of harmful algal blooms (HABs) using locked nucleic acids and bead array technology. Limnol Oceanogr Methods 8:269-284.
  • Erdner DL, Percy L, Keafer B, Lewis J, Anderson DM. 2010. A quantitative real-time pcr assay for the identification and enumeration of alexandrium cysts in marine sediments. Deep Sea Res Part 2 Top Stud Oceanogr. 57(3-4):279-287.
  • Fang X, Dong W, Thornton C, Scheffler B, Willett KL. 2010. Benzo(a)pyrene induced glycine n-methyltransferase messenger RNA expression in fundulus heteroclitus embryos. Mar Environ Res 69 Suppl:S74-76.
  • Fang X, Dong W, Thornton C, Willett KL. 2010. Benzo[a]pyrene effects on glycine n-methyltransferase mRNA expression and enzyme activity in fundulus heteroclitus embryos. Aquat Toxicol 98(2):130-138.
  • Fleisher JM, Fleming LE, Solo-Gabriele HM, Kish JK, Sinigalliano CD, Plano L, Elmir SM, Wang JD, Withum K, Shibata T, Gidley ML, Abdelzaher A, He G, Ortega C, Zhu X, Wright M, Hollenbeck J, Backer LC. 2010. The beaches study: Health effects and exposures from non-point source microbial contaminants in subtropical recreational marine waters. Int J Epidemiol 39(5):1291-1298.
  • Grant KS, Burbacher TM, Faustman EM, Gratttan L. 2010. Domoic acid: Neurobehavioral consequences of exposure to a prevalent marine biotoxin. Neurotoxicol Teratol 32(2):132-141.
  • Guo F, An T, Rein KS. 2010. Human metabolites of brevetoxin pbtx-2: Identification and confirmation of structure. Toxicon 56(4):648-651.
  • Guo F, An T, Rein KS. 2010. The algal hepatoxoxin okadaic acid is a substrate for human cytochromes cyp3a4 and cyp3a5. Toxicon 55(2-3):325-332.
  • Halliday E, Griffith JF, Gast RJ. 2010. Use of an exogenous plasmid standard and quantitative PCR to monitor spatial and temporal distribution of enterococcus SPP. In beach sands. Limnol Oceanogr Methods 8(APR):146-154.
  • Kirkpatrick B, Bean JA, Fleming LE, Kirkpatrick G, Grief L, Nierenberg K, Reich A, Watkins S, Naar J. 2010. Gastrointestinal emergency room admissions and Florida red tide blooms. Harmful Algae 9(1):82-86.
  • Lasek-Nesselquist E, Welch DM, Sogin ML. 2010. The identification of a new giardia duodenalis assemblage in marine vertebrates and a preliminary analysis of g. Duodenalis population biology in marine systems. Int J Parasitol. 40(9):1063-1074.
  • Moustafa A, Evans AN, Kulis DM, Hackett JD, Erdner DL, Anderson DM, Bhattacharya D. 2010. Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence. PLoS One 5(3):e9688.
  • Nierenberg K, Byrne MM, Fleming LE, Stephan W, Reich A, Backer LC, Tanga E, Dalpra DR, Kirkpatrick B. 2010. Florida red tide perception: Residents versus tourists. Harmful Algae 9(6):600-606.
  • Nierenberg K, Kirner K, Hoagland P, Ullmann S, Leblanc WG, Kirkpatrick G, Fleming LE, Kirkpatrick B. 2010. Changes in work habits of lifeguards in relation to Florida red tide. Harmful Algae 9(4):419-425.
  • Olascoaga MJ. 2010. Isolation on the west Florida shelf with implications for red tides and pollutant dispersal in the Gulf of Mexico. Nonlinear Process Geophys 17(6):685-696.
  • Pitcher GC, Figueiras FG, Hickey BM, Moita MT. 2010. The physical oceanography of upwelling systems and the development of harmful algal blooms. Prog Oceanogr 85(1-2):5-32.
  • Robinson JF, Griffith WC, Yu X, Hong S, Kim E, Faustman EM. 2010. Methylmercury induced toxicogenomic response in c57 and SWV mouse embryos undergoing neural tube closure. Reprod Toxicol 30(2):284-291.
  • Robinson JF, Guerrette Z, Yu X, Hong S, Faustman EM. 2010. A systems-based approach to investigate dose- and time-dependent methylmercury-induced gene expression response in c57bl/6 mouse embryos undergoing neurulation. Birth Defects Res B Dev Reprod Toxicol 89(3):188-200.
  • Robinson JF, Port JA, Yu X, Faustman EM. 2010. Integrating genetic and toxicogenomic information for determining underlying susceptibility to developmental disorders. Birth Defects Res A Clin Mol Teratol 88(10):920-930.
  • Scornaienchi ML, Thornton C, Willett KL, Wilson JY. 2010. Functional differences in the cytochrome p450 1 family enzymes from zebrafish (danio rerio) using heterologously expressed proteins. Arch Biochem Biophys. 502(1):17-22.
  • Scornaienchi ML, Thornton C, Willett KL, Wilson JY. 2010. Cytochrome p450-mediated 17beta-estradiol metabolism in zebrafish (danio rerio). J Endocrinol 206(3):317-325.
  • Shibata T, Solo-Gabriele HM, Sinigalliano CD, Gidley ML, Plano LR, Fleisher JM, Wang JD, Elmir SM, He G, Wright ME, Abdelzaher AM, Ortega C, Wanless D, Garza AC, Kish J, Scott T, Hollenbeck J, Backer LC, Fleming LE. 2010. Evaluation of conventional and alternative monitoring methods for a recreational marine beach with nonpoint source of fecal contamination. Environ Sci Technol 44(21):8175-8181.
  • Sinigalliano CD, Fleisher JM, Gidley ML, Solo-Gabriele HM, Shibata T, Plano LR, Elmir SM, Wanless D, Bartkowiak J, Boiteau R, Withum K, Abdelzaher AM, He G, Ortega C, Zhu X, Wright ME, Kish J, Hollenbeck J, Scott T, Backer LC, Fleming LE. 2010. Traditional and molecular analyses for fecal indicator bacteria in non-point source subtropical recreational marine waters. Water Res 44(13):3763-3772.
  • Sullivan MB, Huang KH, Ignacio-Espinoza JC, Berlin AM, Kelly L, Weigele PR, Defrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, Osburne MS, Henn MR, Chisholm SW. 2010. Genomic analysis of oceanic cyanobacterial myoviruses compared with t4-like myoviruses from diverse hosts and environments. Environ Microbiol 12(11):3035-3056.
  • Wang JD, Solo-Gabriele HM, Abdelzaher AM, Fleming LE. 2010. Estimation of enterococci input from bathers and animals on a recreational beach using camera images. Mar Pollut Bull 60(8):1270-1278.
  • Wang L, Camus AC, Dong W, Thornton C, Willett KL. 2010. Expression of cyp1c1 and cyp1a in fundulus heteroclitus during PAH-induced carcinogenesis. Aquat Toxicol. 99(4):439-447.
  • Wills LP, Jung D, Koehrn K, Zhu S, Willett KL, Hinton DE and Di Giulio RT. 2010. Comparative chronic liver toxicity of benzo[a]pyrene in two populations of the Atlantic killifish (fundulus heteroclitus) with different exposure histories. Environ Health Perspect 118(10):1376-1381.

2011

  • Abdelzaher AM, Wright ME, Ortega C, Hasan AR, Shibata T, Solo-Gabriele HM, Kish J, Withum K, He G, Elmir SM, Bonilla JA, Bonilla TD, Palmer CJ, Scott TM, Lukasik J, Harwood VJ, Mcquaig S, Sinigalliano CD, Gidley ML, Wanless D, Plano LR, Garza AC, Zhu X, Stewart JR, Dickerson JW, Yampara-Iquise H, Carson C, Fleisher JM, Fleming LE. 2011. Daily measures of microbes and human health at a non-point source marine beach. J Water Health 9(3):443-457.
  • Agogue H, Lamy D, Neal PR, Sogin ML, Herndl GJ. 2011. Water mass-specificity of bacterial communities in the north Atlantic revealed by massively parallel sequencing. Mol Ecol 20(2):258-274.
  • Bean JA, Fleming LE, Kirkpatrick B, Backer LC, Nierenberg K, Reich A, Cheng YS, Wanner A, Benson J, Naar J, Pierce R, Abraham WM, Kirkpatrick G, Hollenbeck J, Zaias J, Mendes E, Baden DG. 2011. Florida red tide toxins (brevetoxins) and longitudinal respiratory effects in asthmatics. Harmful Algae 10(6):744-748.
  • Bowen JL, Ward BB, Morrison HG, Hobbie JE, Valiela I, Deegan LA, Sogin ML. 2011. Microbial community composition in sediments resists perturbation by nutrient enrichment. ISME J 5(9):1540-1548.
  • Carvalho GA, Minnett PJ, Banzon VF, Baringer W, Heil CA. 2011. Long-term evaluation of three satellite ocean color algorithms for identifying harmful algal blooms (karenia brevis) along the west coast of Florida: A matchup assessment. Remote Sens Environ 115(1):1-18.
  • Crielaard W, Zaura E, Schuller AA, Huse SM, Montijn RC, Keijser BJ. 2011. Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health. BMC Med Genomics 4:22.
  • Erdner DL, Richlen M, Mccauley LA, Anderson DM. 2011. Diversity and dynamics of a widespread bloom of the toxic dinoflagellate alexandrium fundyense. PLoS One 6(7):e22965.
  • Fleming LE, Kirkpatrick B, Backer LC, Walsh CJ, Nierenberg K, Clark J, Reich A, Hollenbeck J, Benson J, Cheng YS, Naar J, Pierce R, Bourdelais AJ, Abraham WM, Kirkpatrick G, Zaias J, Wanner A, Mendes E, Shalat S, Hoagland P, Stephan W, Bean J, Watkins S, Clarke T, Byrne M, Baden DG. 2011. Review of Florida red tide and human health effects. Harmful Algae 10(2):224-233.
  • Fux E, Smith JL, Tong M, Guzman L, Anderson DM. 2011. Toxin profiles of five geographical isolates of dinophysis spp. From North and South America. Toxicon 57(2):275-287.
  • Gast RJ, Gorrell L, Raubenheimer B, Elgar S. 2011. Impact of erosion and accretion on the distribution of enterococci in beach sands. Cont Shelf Res 31(14):1457-1461.
  • Gast RJ, Moran DM, Dennett MR, Wurtsbaugh WA, Amaral-Zettler LA. 2011. Amoebae and legionella pneumophila in saline environments. J Water Health 9(1):37-52.
  • Guannel ML, Horner-Devine MC, Rocap G. 2011. Bacterial community composition differs with species and toxigenicity of the diatom pseudo-nitzschia. Aquatic Microbial Ecology 64(2):117-133.
  • Halliday E, Gast RJ. 2011. Bacteria in beach sands: An emerging challenge in protecting coastal water quality and bather health. Environ Sci Technol 45(2):370-379.
  • Harrison PJ, Furuya K, Glibert PM, Xu J, Liu HB, Yin K, Lee JHW, Anderson DM, Gowen R, Al-Azri AR, Ho AYT. 2011. Geographical distribution of red and green noctiluca scintillans. Chinese Journal of Oceanology and Limnology 29(4):807-831.
  • Kirkpatrick B, Fleming LE, Bean JA, Nierenberg K, Backer LC, Cheng YS, Pierce R, Reich A, Naar J, Wanner A, Abraham WM, Zhou Y, Hollenbeck J, Baden DG. 2011. Aerosolized red tide toxins (brevetoxins) and asthma: Continued health effects after 1 hour beach exposure. Harmful Algae 10(2):138-143.
  • Morey JS, Monroe EA, Kinney AL, Beal M, Johnson JG, Hitchcock GL, Van Dolah FM. 2011. Transcriptomic response of the red tide dinoflagellate, karenia brevis, to nitrogen and phosphorus depletion and addition. BMC Genomics 12:346.
  • Nierenberg K, Hollenbeck J, Fleming LE, Stephan W, Reich A, Backer LC, Currier R and Kirkpatrick B. 2011. Frontiers in outreach and education: The Florida red tide experience. Harmful Algae. 10(4):374-380.
  • Perry DA, Morrison HG, Adam RD. 2011. Optical map of the genotype a1 wb c6 giardia lamblia genome isolate. Mol Biochem Parasitol 180(2):112-114.
  • Phillips MC, Solo-Gabriele HM, Piggot AM, Klaus JS, Zhang Y. 2011. Relationships between sand and water quality at recreational beaches. Water Res 45(20):6763-6769.
  • Phillips MC, Solo-Gabriele HM, Reniers AJ, Wang JD, Kiger RT, Abdel-Mottaleb N. 2011. Pore water transport of enterococci out of beach sediments. Mar Pollut Bull 62(11):2293-2298.
  • Plano LR, Garza AC, Shibata T, Elmir SM, Kish J, Sinigalliano CD, Gidley ML, Miller G, Withum K, Fleming LE, Solo-Gabriele HM. 2011. Shedding of staphylococcus aureus and methicillin-resistant staphylococcus aureus from adult and pediatric bathers in marine waters. BMC Microbiol 11(1):5.
  • Ralston EP, Kite-Powell H, Beet A. 2011. An estimate of the cost of acute health effects from food- and water-borne marine pathogens and toxins in the USA. J Water Health 9(4):680-694.
  • Robinson JF, Yu X, Moreira EG, Hong S, Faustman EM. 2011. Arsenic- and cadmium-induced toxicogenomic response in mouse embryos undergoing neurulation. Toxicol Appl Pharmacol 250(2):117-129.
  • Shah AH, Abdelzaher AM, Phillips M, Hernandez R, Solo-Gabriele HM, Kish J, Scorzetti G, Fell JW, Diaz MR, Scott TM, Lukasik J, Harwood VJ, Mcquaig S, Sinigalliano CD, Gidley ML, Wanless D, Ager A, Lui J, Stewart JR, Plano LR, Fleming LE. 2011. Indicator microbes correlate with pathogenic bacteria, yeasts and helminthes in sand at a subtropical recreational beach site. J Appl Microbiol 110(6):1571-1583.
  • Tong MM, Kulis DM, Fux E, Smith JL, Hess P, Zhou QX, Anderson DM. 2011. The effects of growth phase and light intensity on toxin production by dinophysis acuminata from the northeastern united states. Harmful Algae 10(3):254-264.
  • Wright ME, Abdelzaher AM, Solo-Gabriele HM, Elmir S, Fleming LE. 2011. The inter-tidal zone is the pathway of input of enterococci to a subtropical recreational marine beach. Water Sci Technol 63(3):542-549.
  • Wurch LL, Haley ST, Orchard ED, Gobler CJ, Dyhrman ST. 2011. Nutrient-regulated transcriptional responses in the brown tide-forming alga aureococcus anophagefferens. Environ Microbiol 13(2):468-481.
  • Yu X, Sidhu JS, Hong S, Robinson JF, Ponce RA, Faustman EM. 2011. Cadmium induced p53-dependent activation of stress signaling, accumulation of ubiquitinated proteins, and apoptosis in mouse embryonic fibroblast cells. Toxicol Sci 120(2):403-412.
  • Zhu X, Wang JD, Solo-Gabriele HM, Fleming LE. 2011. A water quality modeling study of non-point sources at recreational marine beaches. Water Res 45(9):2985-2995.

2012

  • Anderson DM, Alpermann TJ, Cembella AD, Collos Y, Masseret E, Montresor M. 2012. The globally distributed genus alexandrium: Multifaceted roles in marine ecosystems and impacts on human health. Harmful Algae 14:10-35.
  • Anderson DM, Cembella AD, Hallegraeff GM. 2012. Progress in understanding harmful algal blooms: Paradigm shifts and new technologies for research, monitoring, and management. Ann Rev Mar Sci 4:143-176.
  • Bender SJ, Parker MS, Armbrust EV. 2012. Coupled effects of light and nitrogen source on the urea cycle and nitrogen metabolism over a diel cycle in the marine diatom thalassiosira pseudonana. Protist 163(2):232-251.
  • Bowen JL, Morrison HG, Hobbie JE, Sogin ML. 2012. Salt marsh sediment diversity: A test of the variability of the rare biosphere among environmental replicates. ISME J 6(11):2014-2023.
  • Brand LE, Campbell L, Bresnan E. 2012. Karenia: The biology and ecology of a toxic genus. Harmful Algae 14:156-178.
  • Chadsey M, Trainer VL, Leschine TM. 2012. Cooperation of science and management for harmful algal blooms: Domoic acid and the Washington coast razor clam fishery. Coastal Management 40(1):33-54.
  • Chan CX, Soares MB, Bonaldo MF, Wisecaver JH, Hackett JD, Anderson DM, Erdner DL, Bhattacharya D. 2012. Analysis of alexandrium tamarense (dinophyceae) genes reveals the complex evolutionary history of a microbial eukaryote. Journal of Phycology 48(5):1130-1142.
  • Enns AA, Vogel LJ, Abdelzaher AM, Solo-Gabriele HM, Plano LR, Gidley ML, Phillips MC, Klaus JS, Piggot AM, Feng Z, Reniers AJ, Haus BK, Elmir SM, Zhang Y, Jimenez NH, Abdel-Mottaleb N, Schoor ME, Brown A, Khan SQ, Dameron AS, Salazar NC, Fleming LE. 2012. Spatial and temporal variation in indicator microbe sampling is influential in beach management decisions. Water Res 46(7):2237-2246.
  • Fiorentino LA, Olascoaga MJ, Reniers A, Feng Z, Beron-Vera FJ, Macmahan JH. 2012. Using lagrangian coherent structures to understand coastal water quality. Cont Shelf Res. 47:145-149.
  • Hinners T, Tsuchiya A, Stern AH, Burbacher TM, Faustman EM, Marien K. 2012. Chronologically matched toenail-hg to hair-hg ratio: Temporal analysis within the Japanese community (U.S.). Environ Health 11:81.
  • Hitchcock GL, Fourqurean JW, Drake JL, Mead RN, Heil CA. 2012. Brevetoxin persistence in sediments and seagrass epiphytes of east Florida coastal waters. Harmful Algae 13:89-94.
  • Liu L, Guo F, Crain S, Quilliam MA, Wang X, Rein KS. 2012. The structures of three metabolites of the algal hepatotoxin okadaic acid produced by oxidation with human cytochrome p450. Bioorg Med Chem 20(12):3742-3745.
  • Mendoza WG, Kang Y, Zika RG. 2012. Resolving dom fluorescence fractions during a karenia brevis bloom patch on the southwest Florida shelf. Cont Shelf Res 32:121-129.
  • Olascoaga MJ,Haller G. 2012. Forecasting sudden changes in environmental pollution patterns. Proc Natl Acad Sci USA 109(13):4738-4743.
  • Piggot AM, Klaus JS, Johnson S, Phillips MC, Solo-Gabriele HM. 2012. Relationship between enterococcal levels and sediment biofilms at recreational beaches in south Florida. Appl Environ Microbiol 78(17):5973-5982.
  • Port JA, Wallace JC, Griffith WC, Faustman EM. 2012. Metagenomic profiling of microbial composition and antibiotic resistance determinants in Puget Sound. PLoS One 7(10):e48000.
  • Richlen ML, Erdner DL, Mccauley LaR, Libera K, Anderson DM. 2012. Extensive genetic diversity and rapid population differentiation during blooms of alexandrium fundyense (dinophyceae) in an isolated salt pond on Cape Cod, MA, USA. Ecology and Evolution 2(10):2583-2594.
  • Shibata T, Solo-Gabriele HM. 2012. Quantitative microbial risk assessment of human illness from exposure to marine beach sand. Environ Sci Technol 46(5):2799-2805.
  • Smith JL, Tong MM, Fux E, Anderson DM. 2012. Toxin production, retention, and extracellular release by dinophysis acuminata during extended stationary phase and culture decline. Harmful Algae 19:125-132.
  • Tsuchiya A, Duff R, Stern AH, White JW, Krogstad F, Burbacher TM, Faustman EM, Marien K. 2012. Single blood-hg samples can result in exposure misclassification: Temporal monitoring within the japanese community (united states). Environ Health 11:37.
  • Vandewalle JL, Goetz GW, Huse SM, Morrison HG, Sogin ML, Hoffmann RG, Yan K, Mclellan SL. 2012. Acinetobacter, aeromonas and trichococcus populations dominate the microbial community within urban sewer infrastructure. Environ Microbiol 14(9):2538-2552.
  • Xu J, Ho AYT, He L, Yin KD, Hung C, Choi N, Lam PKS, Wu RSS, Anderson DM, Harrison PJ. 2012. Effects of inorganic and organic nitrogen and phosphorus on the growth and toxicity of two alexandrium species from Hong Kong. Harmful Algae 16:89-97.

2013

  • Abdelzaher AM, Solo-Gabriele HM, Phillips MC, Elmir SM, Fleming LE. 2013. An alternative approach to water regulations for public health protection at bathing beaches. J Environ Public Health 2013:138521.
  • Allmann E, Pan L, Li L, Li D, Wang S, Lu Y. 2013. Presence of enteroviruses in recreational water in Wuhan, China. J Virol Methods 193(2):327-331.
  • Aluru N, Deak KL, Jenny MJ, Hahn ME. 2013. Developmental exposure to valproic acid alters the expression of microRNAs involved in neurodevelopment in zebrafish. Neurotoxicol Teratol 40:46-58.
  • Armstrong JL, Fenske RA, Yost MG, Tchong-French M, Yu J. 2013. Comparison of polyurethane foam and XAD-2 sampling matrices to measure airborne organophosphorus pesticides and their oxygen analogs in an agricultural community. Chemosphere 92(4):451-457
  • Feary DA, Burt JA, Bauman AG, Al Hazeem S, Abdel-Moati MA, Al-Khalifa KA, Anderson DM, Amos C, Baker A, Bartholomew A, Bento R, Cavalcante GH, Chen CA, Coles SL, Dab K, Fowler AM, George D, Grandcourt E, Hill R, John DM, Jones DA, Keshavmurthy S, Mahmoud H, Moradi Och Tapeh M, Mostafavi PG, Naser H, Pichon M, Purkis S, Riegl B, Samimi-Namin K, Sheppard C, Vajed Samiei J, Voolstra CR, Wiedenmann J. 2013. Critical research needs for identifying future changes in Gulf coral reef ecosystems. Mar Pollut Bull 72(2):406-416.
  • Feng ZX, Reniers A, Haus BK, Solo-Gabriele HM. 2013. Modeling sediment-related enterococci loading, transport, and inactivation at an embayed nonpoint source beach. Water Resour Res 49(2):693-712.
  • Giordano G, Kavanagh TJ, Faustman EM, White CC, Costa LG. 2013. Low-level domoic acid protects mouse cerebellar granule neurons from acute neurotoxicity: role of glutathione. Toxicol Sci 132(2):399-408.
  • Hackett JD, Wisecaver JH, Brosnahan ML, Kulis DM, Anderson DM, Bhattacharya D, Plumley FG, Erdner DL. 2013. Evolution of saxitoxin synthesis in cyanobacteria and dinoflagellates. Mol Biol Evol 30(1):70-78.
  • Marshall KT, Morris RM. 2013. Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade. ISME J 7(2):452-455.
  • Plano LR, Shibata T, Garza AC, Kish J, Fleisher JM, Sinigalliano CD, Gidley ML, Withum K, Elmir SM, Hower S, Jackson CR, Barrett JB, Cleary T, Davidson M, Davis J, Mukherjee S, Fleming LE, Solo-Gabriele HM. 2013. Human-associated methicillin-resistant Staphylococcus aureus from a subtropical recreational marine beach. Microb Ecol 65(4):1039-1051.
  • Port JA, Parker MS, Kodner RB, Wallace JC, Armbrust EV, Faustman EM. 2013. Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics. BMC Genomics 14:503.
  • Schriewer A, Goodwin KD, Sinigalliano CD, Cox AM, Wanless D, Bartkowiak J, Ebentier DL, Hanley KT, Ervin J, Deering LA, Shanks OC, Peed LA, Meijer WG, Griffith JF, Santo Domingo J, Jay JA, Holden PA, Wuertz S. 2013. Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study. Water Res 47(18):6909-6920.
  • Sinigalliano CD, Ervin JS, Van De Werfhorst LC, Badgley BD, Balleste E, Bartkowiak J, Boehm AB, Byappanahalli M, Goodwin KD, Gourmelon M, Griffith J, Holden PA, Jay J, Layton B, Lee C, Lee J, Meijer WG, Noble R, Raith M, Ryu H, Sadowsky MJ, Schriewer A, Wang D, Wanless D, Whitman R, Wuertz S, Santo Domingo JW. 2013. Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources. Water Res 47(18):6883-6896.
  • Velo-Suarez L, Brosnahan ML, Anderson DM, McGillicuddy DJ, Jr. 2013. A quantitative assessment of the role of the parasite Amoebophrya in the termination of Alexandrium fundyense blooms within a small coastal embayment. PLoS One 8(12):e81150.
  • Wang H, Tong J, Bi Y, Wang C, Guo L, Lu Y. 2013. Evaluation of mercury mediated in vitro cytotoxicity among cell lines established from green sea turtles. Toxicol In Vitro 27(3):1025-1030.
  • Yeo SK, Huggett MJ, Eiler A, Rappe MS. 2013. Coastal bacterioplankton community dynamics in response to a natural disturbance. PLoS One 8(2):e56207.

2014

  • Agarwal V, El Gamal AA, Yamanaka K, Poth D, Kersten RD, Schorn M, Allen EE, Moore BS. 2014. Biosynthesis of polybrominated aromatic organic compounds by marine bacteria. Nat Chem Biol 10(8):640-647.
  • Agarwal V, Moore BS. 2014. Enzymatic synthesis of polybrominated dioxins from the marine environment. ACS Chem Biol 9(9):1980-1984.
  • Anderson DM, Couture DA, Kleindinst JL, Keafer BA, McGillicuddy DJ, Jr., Martin JL, Richlen ML, Hickey JM, Solow AR. 2014. Understanding interannual, decadal level variability in paralytic shellfish poisoning toxicity in the Gulf of Maine: the HAB index. Deep Sea Res Part 2 Top Stud Oceanogr 103:264-276.
  • Anderson DM, Keafer BA, Kleindinst JL, McGillicuddy DJ, Jr., Martin JL, Norton K, Pilskaln CH, Smith JL, Sherwood CR, Butman B. 2014. Alexandrium fundyense cysts in the Gulf of Maine: long-term time series of abundance and distribution, and linkages to past and future blooms. Deep Sea Res Part 2 Top Stud Oceanogr 103:6-26.
  • Brosnahan ML, Farzan S, Keafer BA, Sosik HM, Olson RJ, Anderson DM. 2014. Complexities of bloom dynamics in the toxic dinoflagellate Alexandrium fundyense revealed through DNA measurements by imaging flow cytometry coupled with species-specific rRNA probes. Deep Sea Res Part 2 Top Stud Oceanogr 103:185-198.
  • Butman B, Aretxabaleta AL, Dickhudt PJ, Dalyander PS, Sherwood CR, Anderson DM, Keafer BA, Signell RP. 2014. Investigating the importance of sediment resuspension in Alexandrium fundyense cyst population dynamics in the Gulf of Maine. Deep Sea Res Part 2 Top Stud Oceanogr 103:79-95.
  • Deeds JR, Petitpas CM, Shue V, White KD, Keafer BA, McGillicuddy DJ, Jr., Milligan PJ, Anderson DM, Turner JT. 2014. PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010: 1. toxin levels. Deep Sea Res Part 2 Top Stud Oceanogr 103:329-349.
  • Fernandes LF, Hubbard KA, Richlen ML, Smith J, Bates SS, Ehrman J, Leger C, Mafra LL, Jr., Kulis D, Quilliam M, Libera K, McCauley L, Anderson DM. 2014. Diversity and toxicity of the diatom Peragallo in the Gulf of Maine, Northwestern Atlantic Ocean. Deep Sea Res Part 2 Top Stud Oceanogr 103:139-162.
  • Fernandes LF, Hubbard KA, Richlen ML, Smith J, Bates SS, Ehrman J, Leger C, Mafra LL, Kulis D, Quilliam M, Libera K, McCauley L, Anderson DM. 2014. Diversity and toxicity of the diatom Pseudo-nitzschia Peragallo in the Gulf of Maine, Northwestern Atlantic Ocean. Deep Sea Res Part 2 Top Stud Oceanogr 103:139-162.
  • Halliday E, McLellan SL, Amaral-Zettler LA, Sogin ML, Gast RJ. 2014. Comparison of bacterial communities in sands and water at beaches with bacterial water quality violations. PLoS One 9(3):e90815.
  • Hernandez RJ, Hernandez Y, Jimenez NH, Piggot AM, Klaus JS, Feng Z, Reniers A, Solo-Gabriele HM. 2014. Effects of full-scale beach renovation on fecal indicator levels in shoreline sand and water. Water Res 48:579-591.
  • Hitchcock GL, Kirkpatrick G, Lane PVZ, Langdon C. 2014. Comparative diel oxygen cycles preceding and during a Karenia bloom in Sarasota Bay, Florida, USA. Harmful Algae 38:95-100.
  • Hubbard KA, Olson CE, Armbrust EV. 2014. Molecular characterization of Pseudo-nitzschia community structure and species ecology in a hydrographically complex estuarine system (Puget Sound, Washington, USA). Mar Ecol Prog Ser 507:39-55.
  • Ishikawa A, Hattori M, Ishii KI, Kulis DM, Anderson DM, Imai I. 2014. In situ dynamics of cyst and vegetative cell populations of the toxic dinoflagellate Alexandrium catenella in Ago Bay, central Japan. J Plankton Res 36(5):1333-1343.
  • John U, Litaker RW, Montresor M, Murray S, Brosnahan ML, Anderson DM. 2014. Formal revision of the Alexandrium tamarense species complex (Dinophyceae) taxonomy: the introduction of five species with emphasis on molecular-based (rDNA) classification. Protist 165(6):779-804.
  • John U, Litaker W, Montresor M, Murray S, Brosnahan ML, Anderson DM. 2014. (2302) Proposal to reject the name Gonyaulax catenella (Alexandrium catenella) (Dinophyceae). Taxon 63(4):932-933.
  • Kleindinst JL, Anderson DM, McGillicuddy DJ, Jr., Stumpf RP, Fisher KM, Couture DA, Hickey JM, Nash C. 2014. Categorizing the severity of paralytic shellfish poisoning outbreaks in the Gulf of Maine for forecasting and management. Deep Sea Res Part 2 Top Stud Oceanogr 103:277-287.
  • Koch F, Kang Y, Villareal TA, Anderson DM, Gobler CJ. 2014. A novel immunofluorescence flow cytometry technique detects the expansion of brown tides caused by Aureoumbra lagunensis to the Caribbean Sea. Appl Environ Microbiol 80(16):4947-4957.
  • Luo CS, Liang JR, Lin Q, Li C, Bowler C, Anderson DM, Wang P, Wang XW, Gao YH. 2014. Cellular responses associated with ROS production and cell fate decision in early stress response to iron limitation in the diatom Thalassiosira pseudonana. J Proteome Res 13(12):5510-5523.
  • McGillicuddy DJ, Jr., Brosnahan ML, Couture DA, He R, Keafer BA, Manning JP, Martin JL, Pilskaln CH, Townsend DW, Anderson DM. 2014. A red tide of Alexandrium fundyense in the Gulf of Maine. Deep Sea Res Part 2 Top Stud Oceanogr 103:174-184.
  • McGillicuddy DJ, Jr., Townsend DW, Keafer BA, Thomas MA, Anderson DM. 2014. Georges Bank: a leaky incubator of blooms. Deep Sea Res Part 2 Top Stud Oceanogr 103:163-173.
  • Phillips MC, Feng Z, Vogel LJ, Reniers AJ, Haus BK, Enns AA, Zhang Y, Hernandez DB, Solo-Gabriele HM. 2014. Microbial release from seeded beach sediments during wave conditions. Mar Pollut Bull 79(1-2):114-122.
  • Pilskaln CH, Anderson DM, McGillicuddy DJ, Keafer BA, Hayashi K, Norton K. 2014. Spatial and temporal variability of Alexandrium cyst fluxes in the Gulf of Maine: relationship to seasonal particle export and resuspension. Deep Sea Res Part 2 Top Stud Oceanogr 103:40-54.
  • Pilskaln CH, Hayashi K, Keafer BA, Anderson DM, McGillicuddy DJ, Jr. 2014. Benthic nepheloid layers in the Gulf of Maine and Alexandrium cyst inventories. Deep Sea Res Part 2 Top Stud Oceanogr 103:55-65.
  • Port JA, Cullen AC, Wallace JC, Smith MN, Faustman EM. 2014. Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments. Environ Health Perspect 122(3):222-228.
  • Ralston DK, Keafer BA, Brosnahan ML, Anderson DM. 2014. Temperature dependence of an estuarine harmful algal bloom: resolving interannual variability in bloom dynamics using a degree day approach. Limnol Oceanogr 59(4):1112-1126.
  • Schmidt VT, Reveillaud J, Zettler E, Mincer TJ, Murphy L, Amaral-Zettler LA. 2014. Oligotyping reveals community level habitat selection within the genus Vibrio. Front Microbiol 5:563.
  • Vahtera E, Crespo BG, McGillicuddy DJ, Jr., Olli K, Anderson DM. 2014. Alexandrium fundyense cyst viability and germling survival in light vs. dark at a constant low temperature. Deep Sea Res Part 2 Top Stud Oceanogr 103:112-119.
  • Wang L, Zhang J, Duan J, Gao X, Zhu W, Lu X, Yang L, Zhang J, Li G, Ci W, Li W, Zhou Q, Aluru N, Tang F, He C, Huang X, Liu J. 2014. Programming and inheritance of parental DNA methylomes in mammals. Cell 157(4):979-991.
  • Whitman R, Harwood VJ, Edge TA, Nevers M, Byappanahalli M, Vijayavel K, Brandao J, Sadowsky MJ, Alm EW, Crowe A, Ferguson D, Ge Z, Halliday E, Kinzelman J, Kleinheinz G, Przybyla-Kelly K, Staley C, Staley Z, Solo-Gabriele HM. 2014. Microbes in beach sands: integrating environment, ecology and public health. Rev Enviro Sci Biotechnol 13(3):329-368.

2015

  • Agarwal V, Li J, Rahman I, Borgen M, Aluwihare LI, Biggs JS, Paul VJ, Moore BS. 2015. Complexity of naturally produced polybrominated diphenyl ethers revealed via mass spectrometry. Environ Sci Technol 49(3):1339-1346.
  • Aluru N, Kuo E, Helfrich LW, Karchner SI, Linney EA, Pais JE, Franks DG. 2015. Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio). Toxicol Appl Pharmacol 284(2):142-151.
  • DeGroot DE, Franks DG, Higa T, Tanaka J, Hahn ME, Denison MS. 2015. Naturally-occurring marine brominated indoles are aryl hydrocarbon receptor ligands/agonists. Chem Res Toxicol; doi: 10.1021/acs.chemrestox.5b00003 [Online 22 May 2015].
  • Feng Z, Reniers A, Haus BK, Solo-Gabriele HM, Wang JD, Fleming LE. 2015. A predictive model for microbial counts on beaches where intertidal sand is the primary source. Mar Pollut Bull 94(1-2):37-47.
  • Guannel ML, Haring D, Twiner MJ, Wang Z, Noble AE, Lee PA, Saito MA, Rocap G. 2015. Toxigenicity and biogeography of the diatom Pseudo-nitzschia across distinct environmental regimes in the south Atlantic Ocean. Mar Ecol Prog Ser 526:67-87.
  • Halliday E, Ralston DK, Gast RJ. 2015. Contribution of sand-associated enterococci to dry weather water quality. Environ Sci Technol 49(1):451-458.
  • Hattenrath-Lehmann TK, Smith JL, Wallace RB, Merlo LR, Koch F, Mittelsdorf H, Goleski JA, Anderson DM, Gobler CJ. 2015. The effects of elevated CO2 on the growth and toxicity of field populations and cultures of the saxitoxin-producing dinoflagellate, Alexandrium fundyense. Limnol Oceanogr 60(1):198-214.
  • Hong MY, Lumibao J, Mistry P, Saleh R, Hoh E. 2015. Fish oil contaminated with persistent organic pollutants reduces antioxidant capacity and induces oxidative stress without affecting its capacity to lower lipid concentrations and systemic inflammation in rats. J Nutr 145(5):939-944.
  • Moore SK, Bill BD, Hay LR, Emenegger J, Eldred KC, Greengrove CL, Masura JE, Anderson DM. 2015. Factors regulating excystment of Alexandrium in Puget Sound, WA, USA. Harmful Algae 43:103-110.
  • Ross AC, Gulland LE, Dorrestein PC, Moore BS. 2015. Targeted capture and heterologous expression of the Pseudoalteromonas alterochromide gene cluster in Escherichia coli represents a promising natural product exploratory platform. ACS Synth Biol 4(4):414-420.
  • Shaul NJ, Dodder NG, Aluwihare LI, Mackintosh SA, Maruya KA, Chivers SJ, Danil K, Weller DW, Hoh E. 2015. 6. Environ Sci Technol 49(3):1328-1338.
  • Tong MM, Smith JL, Richlen M, Steidinger KA, Kulis DM, Fux E, Anderson DM. 2015. Characterization and comparison of toxin-producing isolates of Dinophysis acuminata from New England and Canada. J Phycol 51(1):66-81.
  • Villacorte LO, Tabatabai SAA, Anderson DM, Amy GL, Schippers JC, Kennedy MD. 2015. Seawater reverse osmosis desalination and (harmful) algal blooms. Desalination 360:61-80.

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