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Eukaryotic Transcriptional Regulation Group

Defining Gene Regulatory Mechanisms

Paul A. Wade, Ph.D.
Paul Wade, Ph.D.
Deputy Chief, Epigenetics & Stem Cell Biology Laboratory and Principal Investigator
Tel (919) 541-3392
Fax (919) 541-0146
wadep2@niehs.nih.gov
P.O. Box 12233
Mail Drop D4-04
Research Triangle Park, NC 27709

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Research Summary

Paul A. Wade, Ph.D., is Deputy Chief of the Epigenetics and Stem Cell Biology Laboratory and head of the Eukaryotic Transcriptional Regulation Group. The group is interested in defining gene regulatory mechanisms and identifying key regulatory molecules with a focus on chromatin modification. Currently, the group’s studies center on the Mi-2/NuRD complex, a multi-subunit chromatin modification enzyme (Wade et al., 1998). The complex consists of a SNF2-related chromatin remodeling ATPase (Mi-2), a member of the MBD family of methyl CpG binding domain proteins (MBD3), histone deacetylases (HDAC1 and HDAC2), a histone binding protein (RbAp46/p48), a protein of unknown function (known as p66), and an interesting subunit encoded by one of three genes (MTA1, MTA2, or MTA3) in mammals (Wade et al., 1999).

The group has proposed that members of the metastasis associated protein (MTA) family constitute alternative subunits of the complex (Bowen et al., 2004). This hypothesis predicts that individual MTA family members impart functional specificity on the complexes of which they are a component. The group’s recent work has involved establishment of systems to test this hypothesis. This research has led to the development of two unique systems for the analysis of Mi-2/NuRD complex function.

MI-2/NURD Complex Function in Breast Cancer

Members of the metastasis associated protein family (MTA)
Figure 1. Members of the metastasis associated protein family (MTA).
In the context of breast cancer cells, group members found that synthesis of MTA3 is directly regulated by the estrogen receptor and by estradiol (Fujita et al., 2004a). Further, the Eukaryotic Transcriptional Regulation Group conclusively demonstrated that MTA3 is a bona fide component of Mi-2/NuRD in estrogen receptor positive breast cancer cells (Fujita et al., 2003). As predicted by the group’s hypothesis, MTA3 is not found in association with either MTA1 or MTA2. Using a candidate approach, Snail was identified as a direct target of the transcriptional repression function of Mi-2/NuRD in breast cancer cells (Fujita et al., 2003). Snail is a transcription factor that initiates epithelial to mesenchymal transitions in normal development and in cancer. Thus, MTA3 and the Mi-2/NuRD complex are intimately involved in the genetic program downstream of estrogen receptor in breast cancer. At least one function of the complex is to repress genes critical to epithelial to mesenchymal transition, a critical component of invasion and metastasis.
MTA3 is expressed in the B lymphocyte lineage solely in cells resident in the germinal center, mirroring the expression of the master regulator of B cell differentiation, the proto-oncogene BCL-6
Figure 2. MTA3 is expressed in the B lymphocyte lineage solely in cells resident in the germinal center, mirroring the expression of the master regulator of B cell differentiation, the proto-oncogene BCL-6.

MI-2/NURD Complex Function in the Immune System

The Eukaryotic Transcriptional Regulation Group has identified a second biological system that it intends to utilize to study Mi-2/NuRD complex function, the immune system. MTA3 is expressed in a very specific and tightly regulated pattern during development and differentiation of B lymphocytes. B lymphocytes develop from a common lymphoid precursor, ultimately differentiating into antibody secreting plasma cells following encounter with antigen in germinal centers. Germinal center B lymphocytes undergo a remarkable series of biological events, including somatic hypermutation and isotype switching, that results in affinity selection of immunoglobulins. These events are integral to acquired immunity. MTA3 is expressed in the B lymphocyte lineage solely in cells resident in the germinal center, mirroring the expression of the master regulator of B cell differentiation, the proto-oncogene BCL-6 (Figure 2).

The group discovered that MTA3 interacts directly with the transcriptional repressor BCL-6 in germinal center B lymphocytes. This interaction occurs through a novel repression domain located in the central region of BCL-6. Importantly, the interaction between MTA3 and BCL-6 is biologically regulated by acetylation of BCL-6 itself (Fujita et al., 2004b). BCL-6 and the MTA3 containing version of the Mi-2/NuRD complex are involved in repression of genes integral to the plasma cell transcriptional program. Thus, these two molecules participate in regulation of cell fate. When the appropriate biological cues are received, these cells change their transcriptional program to that of the terminally differentiated plasma cell. During this process, expression of both MTA3 and BCL-6 is extinguished.

Summary & Prospectives

The Eukaryotic Transcriptional Regulation Group is currently investigating transcriptional regulation and epigenetic mechanisms using these two rather disparate biological systems. It hopes to determine the roles of individual subunits in the biological function(s) of Mi-2/NuRD and define their biological regulation. Of particular interest in this regard is the coupling of a chromatin remodeling enzyme (the Mi-2 ATPase) to histone deacetylases.

References

  • Bowen, N.J., Fujita, N., Kajita, M., and Wade, P.A. (2004) Mi-2/NuRD: Multiple complexes for many purposes. Biochim. Biophys. Acta 1677, 52-57.
  • Fujita, N., Jaye, D.L., Kajita, M., Geigerman, C., Moreno, C., and Wade, P.A. (2003) MTA3, an Mi-2/NuRD complex subunit, regulates an invasive growth pathway in breast cancer. Cell 113, 207-219.
  • Fujita, N., Kajita, M., Taysavang, P., and Wade, P.A. (2004a) Hormonal regulation of MTA3 transcription in breast cancer cells. Mol Endocrinol 18, 2937-2949.
  • Fujita, N., Jaye, D.L., Gigerman, C., Akyildiz, A., Mooney, M.R., Boss, J.M., and Wade, P.A. (2004b) MTA3 and the Mi-2/NuRD complex regulate cell fate during B-lymphocyte differentiation. Cell 119, 75-86.
  • Wade, P.A., Jones, P.L., Vermaak, D., and Wolffe, A.P. (1998) A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase. Current Biology 8, 843-846.
  • Wade, P.A., Gegonne, A., Jones, P.L., Ballestar, E., Aubry, F., and Wolffe, A.P. (1999) The Mi-2 histone deacetylase complex couples DNA methylation to chromatin remodeling and histone deacetylation. Nature Genetics 23, 62-66.

Major areas of research:

  • Pursuing additional targets of the complex
  • Studying chromatin architecture and histone modification status at target loci
  • Determining where to place Mi-2/NuRD complex function in the biological context of cell type specific transcription

Current projects:

  • Microarray based analysis of transcriptional targets of Mi-2/NuRD complex in breast cancer
  • Molecular analysis of epigenetic determinants of cell fate during the B cell to plasma cell transition

Wade earned his Ph.D. in 1994 from Indiana University, Bloomington, Indiana and received postdoctoral training in the laboratory of the late Alan Wolffe at NICHD. He has published more than 50 peer-reviewed articles in leading biomedical journals as well as several book chapters. He served as an Assistant Professor in the Department of Pathology and Laboratory Medicine at Emory University before joining NIEHS in October, 2004.

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