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<title>NIEHS Software and Online Tools Updates</title>
<description>Updates and new software released by NIEHS as well as major updates to NIEHS' online tools</description>
<link>http://devnew.niehs.nih.gov/feeds/tools.xml</link>
<language>en-us</language>
<lastBuildDate>Wed, 12 Jan 2011 15:00:00 EST</lastBuildDate>

<item>
<title>Software Update: EpiCenter tool is now available</title>
<description>EpiCenter is a powerful analysis tool of genome-wide mRNA-seq or ChIP-seq data for detecting differentially expressed genes or identifying changes in epigenetic modifications (histone acetylation/methylation patterns). EpiCenter is also capable of performing genome-wide TFBS peaking detection and generating read coverage depth plot data (e.g., WIG files for UCSC genome browser). Implemented with C++ language, EpiCenter is efficient, and typically requires less than 10 minutes to analyze a large dataset. EpiCenter supports major read alignment formats including SAM, BAM, ELAND export, and MAQ formats. 
</description>
<link>http://www.niehs.nih.gov/research/resources/software/epicenter/index.cfm</link>
<language>en-us</language>
<pubDate>Wed, 12 Jan 2011 15:00:00 EST</pubDate>
</item>


<item>
<title>Software Updates</title>
<description>CEBS3, the latest version of CEBS, features more microarray data than previous versions of CEBS. In addition, it contains a new user interface that allows you to see results for one subject across data domains and integrate your data from different domains. At present, CEBS is the only public database that can house data from domains such as clinical pathology, histopathology and 'omics.
</description>
<language>en-us</language>
<pubDate>Wed, 22 Apr 2009 15:00:00 EST</pubDate>
</item>

<item>
<title>Software Updates</title>
<description>The NIEHS new website provides numerous &lt;a href="http://www.niehs.nih.gov/research/resources/index.cfm"&gt;resources for scientists&lt;/a&gt; including &lt;a href="http://www.niehs.nih.gov/research/resources/databases/index.cfm"&gt;multiple dna databases&lt;/a&gt;, &lt;a href="http://www.niehs.nih.gov/research/resources/epresr/index.cfm"&gt;electronic spin resonance software&lt;/a&gt;, and &lt;a href="http://www.niehs.nih.gov/research/atniehs/labs/bb/resources.cfm"&gt;biostatistical applications&lt;/a&gt;.
</description>
<language>en-us</language>
<pubDate>Wed, 19 Sep 2007 15:00:00 EST</pubDate>
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