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NGS QC and RNA-seq

July 10, 2013

Presented by Sara Grimm

Abstract: This module will cover QC of NGS data and analysis of RNAseq data. Some basic aspects of NGS quality control of raw sequencing data will be discussed, focusing on common problems to look for and how to implement work-arounds when possible. A general background on the uses and analysis strategies for RNAseq will be discussed, and the most popularly used tools for mapping, quantification, and visualization of RNAseq data will be described. A simple experimental example will be used to demonstrate these tools & their output.

  • PowerPoint slides for the course available here in pdf (2MB) . Right-Click to download the PDF file.

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